Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, golgi, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 82.29 | 60.89 |
| Zm00001d005997_P002 | Maize | plastid | 81.3 | 60.59 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 58.6 | 43.12 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 58.1 | 42.67 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 58.1 | 42.21 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 57.61 | 42.15 |
| Os09t0481300-01 | Rice | nucleus | 54.11 | 41.18 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 18.95 | 24.68 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 33.42 | 22.52 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 14.46 | 20.79 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 14.21 | 20.65 |
| GSMUA_Achr10P... | Banana | cytosol | 25.44 | 20.24 |
| CDY17403 | Canola | nucleus | 13.72 | 19.93 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 28.93 | 19.53 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.71 | 18.81 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 18.7 | 18.75 |
| AT4G26455.1 | Thale cress | nucleus | 22.19 | 18.2 |
| CDX89333 | Canola | nucleus | 22.44 | 18.18 |
| Bra026434.1-P | Field mustard | nucleus | 22.44 | 18.18 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 18.95 | 18.1 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 17.96 | 18.05 |
| AT5G56210.1 | Thale cress | nucleus | 22.69 | 17.88 |
| Zm00001d025667_P001 | Maize | cytosol | 21.45 | 17.62 |
| CDX94330 | Canola | nucleus | 21.45 | 17.52 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 26.68 | 17.43 |
| PGSC0003DMT400056956 | Potato | nucleus | 25.44 | 17.06 |
| PGSC0003DMT400022426 | Potato | nucleus | 24.44 | 16.72 |
| KRH56393 | Soybean | cytosol | 24.19 | 16.52 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 17.96 | 16.29 |
| CDX82542 | Canola | plastid | 17.71 | 16.03 |
| KRH62532 | Soybean | endoplasmic reticulum | 22.94 | 15.73 |
| CDY24192 | Canola | plastid | 11.47 | 15.18 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 18.45 | 14.29 |
Protein Annotations
| EnsemblPlants:Zm00001d020879_P001 | EnsemblPlants:Zm00001d020879_T001 | EnsemblPlantsGene:Zm00001d020879 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | ProteinID:ONM55751.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0008444254 | UniProt:A0A1D6I6Q5 | MapMan:20.4.2.1.2 | : | : | : |
Description
WPP domain-interacting protein 2
Coordinates
chr7:-:135265751..135268722
Molecular Weight (calculated)
43831.7 Da
IEP (calculated)
5.497
GRAVY (calculated)
-0.506
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGANSVGE SVGESPVPAP APQTRPAEPV TKGRGLRRWR RIPREQHHEG SPVSPGLGNS AGASAGEDLA AQLHKRRYGP ADDKPKGKQD AAAEEVESSV
101: ASVKSSFVPL EVSPPPPPTL TRLDPNLGHL IATTGFSVGA GGADSDNSDD RTSKSSTAAS APRHDFSSVG FGRERDRARS RAPSAAHGKS IQIQKFVEIR
201: KETDEDSTIH QSEIEWSSSP VEELNEKIKM LEWKLEEATM LIKERDSKIL ELDALSQVQP HDTIACNDDL LSLQSDADQL LLEKMEAEIQ CFILTRASHD
301: WKLLAKNQFA LNEAQKSLLT DHKSLETKLR HAENRAMMLE DMVDKLDSQC KELSEISEVL KLQARASRAS LFCSVQFILL CIAIGTILVR FLPPSPEIVP
401: T
101: ASVKSSFVPL EVSPPPPPTL TRLDPNLGHL IATTGFSVGA GGADSDNSDD RTSKSSTAAS APRHDFSSVG FGRERDRARS RAPSAAHGKS IQIQKFVEIR
201: KETDEDSTIH QSEIEWSSSP VEELNEKIKM LEWKLEEATM LIKERDSKIL ELDALSQVQP HDTIACNDDL LSLQSDADQL LLEKMEAEIQ CFILTRASHD
301: WKLLAKNQFA LNEAQKSLLT DHKSLETKLR HAENRAMMLE DMVDKLDSQC KELSEISEVL KLQARASRAS LFCSVQFILL CIAIGTILVR FLPPSPEIVP
401: T
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.