Factsheet for Zm00001d019194_P004

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT1G55535.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT1G55535.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT1G55535.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT1G55535.1	Zm00001d051288_P001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	95.22	95.22
Zm00001d005229_P001	Maize	plasma membrane	87.25	92.02
TraesCS2D01G242700.1	Wheat	plasma membrane	86.85	86.51
TraesCS2B01G262900.1	Wheat	plasma membrane	86.06	85.71
Os07t0223700-00	Rice	plasma membrane	83.27	67.64
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	25.1	64.29
GSMUA_Achr4P02350_001	Banana	plasma membrane	62.55	63.56
TraesCS2A01G244700.1	Wheat	plasma membrane	74.9	55.79
VIT_06s0004g00110.t01	Wine grape	mitochondrion	54.18	55.51
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	47.81	54.55
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	52.59	52.8
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	51.39	51.81
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	49.8	50.61
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	51.39	50.39
Bra030853.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	51.79	50.0
GSMUA_Achr4P10280_001	Banana	plasma membrane	58.96	49.01
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	49.0	48.43
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	49.8	48.08
AT3G13420.3	Thale cress	mitochondrion	44.62	42.42
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	50.6	39.81
CDY43992	Canola	mitochondrion, plasma membrane	42.63	35.91
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	42.63	35.91

Protein Annotations

EMBL:BT040874	EnsemblPlants:Zm00001d019194_P004	EnsemblPlants:Zm00001d019194_T004	EnsemblPlantsGene:Zm00001d019194	EntrezGene:100273346	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR35471	ProteinID:ONM52454.1	ProteinID:ONM52457.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00017B7DBE	UniProt:B4FUT6	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr7:+:21091459..21098897

Molecular Weight (calculated)

27806.5 Da

IEP (calculated)

8.196

GRAVY (calculated)

0.237

Length

251 amino acids

Sequence
(BLAST)

001: MPCCPPSLLG VGPRLRSFLR DYDALQSLAL VLIYLQIGCA LIGSLGALFN GVLVINLVIG LFAVVAIESS SQRLGRTYAV LLFFAVVLDV AWFILFSHAI
101: WTINPDDKYG QLFVFSLRLA LWMQIIGFSV RFLSSFLWIQ MYRLGPSFTT PTYFETNHEA RTSFLSPRSD SVRRNSMADD ILGGSIYDPS YYSSLFEDVR
201: NNACNHQGDK QSGSNDSGST SAGQSPRLKS FACRSLLAND VESGLRRPLN S

Best Arabidopsis Sequence Match ( AT1G55535.3 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPVSL H

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.