CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
extracellular 2
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	100.0	100.0
AT3G13420.3	Thale cress	mitochondrion	66.11	74.62
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	53.69	64.78
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	55.37	64.45
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	54.7	64.17
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	42.62	57.73
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	47.65	56.8
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	46.64	55.82
VIT_06s0004g00110.t01	Wine grape	mitochondrion	44.97	54.69
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	55.03	51.41
GSMUA_Achr4P02350_001	Banana	plasma membrane	38.59	46.56
Zm00001d005229_P001	Maize	plasma membrane	34.9	43.7
TraesCS2B01G262900.1	Wheat	plasma membrane	36.91	43.65
TraesCS2D01G242700.1	Wheat	plasma membrane	36.58	43.25
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	35.91	42.63
Zm00001d019194_P004	Maize	plasma membrane	35.91	42.63
GSMUA_Achr4P10280_001	Banana	plasma membrane	41.61	41.06
Os07t0223700-00	Rice	plasma membrane	37.25	35.92
TraesCS2A01G244700.1	Wheat	plasma membrane	34.56	30.56

Protein Annotations

EnsemblPlants:CDY43992	EnsemblPlantsGene:GSBRNA2T00079386001	GO:A0A078I1N0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	ProteinID:CDY43992	ProteinID:CDY43992.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002548080
UniProt:A0A078I1N0	MapMan:35.2	:	:	:	:

Description

BnaA05g25870DBnaA05g25870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1N0]

Coordinates

chrLK032576:-:43206..45385

Molecular Weight (calculated)

33057.5 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.017

Length

298 amino acids

Sequence
(BLAST)

001: MLCGSLRNRI RNWLRDYVRL QSVVVILIYA QIGCAMIGSL GALYNGVLLI NLAIALFALV AIESNSQSLG RTYAVLLFCA ILLDISWLIL FSSEIWNISS
101: EMYKALYIFS VKLTMAMEIA GFVVRLSSSL LWFQIYRLGA SIVDTSLPRR SDSDSQNSFV DPPCLGSQRS RDPDLRTSLL EPSTTAEHRS RSDDFLEDSI
201: NGPRSGEILE DSIDRPAFPP FNDGPAHQFP PFNDGPPYHF PSCDGGQNNL SSTKVIKHHS AENIFGGSQL SAAEASRHKS PLSRSLESLD SSLHRFKH

Best Arabidopsis Sequence Match ( AT3G13420.4 )
(BLAST)

001: MLCVSLRNRI HNWLRDYVRL QSVVLILIYA QIGCALIGSL GALYNGVVLI NLAIALFGLV AIESNSQSLG RTYAVLLFCA ILLDVSWFIL FSKEIWNISS
101: DMYQVFYIFS VKLTLAMEIA GFVVRLSSSL LWFQIYRLGA SIIDSPFPRQ SDSDLRNSFL EPPLLARQRS RDPELRNSFL QAPAIAKQRS RSDEILEDSI
201: DEPASYTPLL DGGLSNITLP NATQVIKHHS AGDIYKGSQS SAAEASRKKS PLSRSLEALH SSLC

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:A0A178VGS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.