CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	CDX67837	AT3G60600.1	21798944
AT1G55535.1	CDX71796	AT3G60600.1	21798944
AT1G55535.1	CDX89063	AT3G60600.1	21798944
AT1G55535.1	CDY41153	AT3G60600.1	21798944
AT1G55535.1	CDY48365	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	73.04	91.02
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	66.46	85.83
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	67.4	84.65
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	67.4	82.69
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	50.78	64.8
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	50.47	64.66
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	42.32	61.36
VIT_06s0004g00110.t01	Wine grape	mitochondrion	47.02	61.22
CDY43992	Canola	mitochondrion, plasma membrane	51.41	55.03
GSMUA_Achr4P02350_001	Banana	plasma membrane	39.81	51.42
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	39.81	50.6
Zm00001d019194_P004	Maize	plasma membrane	39.81	50.6
Zm00001d005229_P001	Maize	plasma membrane	37.62	50.42
TraesCS2D01G242700.1	Wheat	plasma membrane	39.5	50.0
TraesCS2B01G262900.1	Wheat	plasma membrane	39.19	49.6
GSMUA_Achr4P10280_001	Banana	plasma membrane	43.57	46.03
Os07t0223700-00	Rice	plasma membrane	38.87	40.13
TraesCS2A01G244700.1	Wheat	plasma membrane	38.56	36.5

Protein Annotations

EnsemblPlants:CDY10553	EnsemblPlantsGene:GSBRNA2T00032513001	GO:A0A078FEQ9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	ProteinID:CDY10553	ProteinID:CDY10553.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE797D
UniProt:A0A078FEQ9	MapMan:35.2	:	:	:	:

Description

BnaC03g70610DBnaC03g70610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEQ9]

Coordinates

chrLK032004:+:324710..326598

Molecular Weight (calculated)

35460.8 Da

IEP (calculated)

4.578

GRAVY (calculated)

0.186

Length

319 amino acids

Sequence
(BLAST)

001: MMLCGSLRDR IQPWLRDYVK LQSLAVFLIY IQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYALLLFC ALLLDISWFI LFTQEIWSIS
101: VETYGALYIF SVRLTMAMEM IGFFVRLSSS LLWFQIYRLG ASVVDTSSSS LPRETDSDLR NSFLNPPTPA IDRRCSGAAE EILGGSIYDP AYYTSLFEEE
201: AQSNMTSPKV TQVNHYSAEY NGSPSAAEAS RIKSPGSRSL HAVDEEKGLK QQEDALVLVA MDREYDDSDI EMSRPCVFDT NRKVDDLEIP KILINQLESG
301: GSLMSVKKKV VLLHVAEMV

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.