Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 2
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037108.1-P | Field mustard | extracellular, mitochondrion, plasma membrane, vacuole | 34.62 | 91.84 |
| CDY26095 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 84.62 | 89.07 |
| CDY08251 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 85.0 | 87.01 |
| CDY56020 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 85.38 | 86.72 |
| Bra030853.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 84.62 | 84.62 |
| CDY10553 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 82.69 | 67.4 |
| KRG89467 | Soybean | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 63.46 | 66.27 |
| KRH50507 | Soybean | extracellular, mitochondrion, plasma membrane, vacuole | 62.31 | 64.8 |
| VIT_06s0004g00110.t01 | Wine grape | mitochondrion | 58.08 | 61.63 |
| Solyc01g050070.2.1 | Tomato | extracellular, plasma membrane, vacuole | 51.92 | 61.36 |
| AT3G13420.3 | Thale cress | mitochondrion | 61.92 | 60.98 |
| GSMUA_Achr4P02350_001 | Banana | plasma membrane | 49.62 | 52.23 |
| TraesCS2D01G242700.1 | Wheat | plasma membrane | 48.85 | 50.4 |
| EER96079 | Sorghum | extracellular, mitochondrion, plasma membrane, plastid | 48.08 | 49.8 |
| Zm00001d019194_P004 | Maize | plasma membrane | 48.08 | 49.8 |
| TraesCS2B01G262900.1 | Wheat | plasma membrane | 48.08 | 49.6 |
| Zm00001d005229_P001 | Maize | plasma membrane | 45.38 | 49.58 |
| GSMUA_Achr4P10280_001 | Banana | plasma membrane | 53.85 | 46.36 |
| Os07t0223700-00 | Rice | plasma membrane | 46.54 | 39.16 |
| TraesCS2A01G244700.1 | Wheat | plasma membrane | 45.38 | 35.01 |
Protein Annotations
| MapMan:35.2 | EntrezGene:842001 | ProteinID:AEE33260.1 | ArrayExpress:AT1G55535 | EnsemblPlantsGene:AT1G55535 | RefSeq:AT1G55535 |
| TAIR:AT1G55535 | RefSeq:AT1G55535-TAIR-G | EnsemblPlants:AT1G55535.1 | TAIR:AT1G55535.1 | Unigene:At.45200 | EMBL:BT015803 |
| EMBL:BT020190 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_683436.3 | PO:PO:0000005 | PO:PO:0000293 | PANTHER:PTHR35471 | UniProt:Q5XF13 | TMHMM:TMhelix |
| UniParc:UPI000034F4A8 | SEG:seg | : | : | : | : |
Description
At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
Coordinates
chr1:-:20731589..20734052
Molecular Weight (calculated)
28720.8 Da
IEP (calculated)
5.292
GRAVY (calculated)
0.291
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.