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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, extracellular, vacuole

Predictor Summary:
  • plastid 2
  • mitochondrion 2
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, mitochondrion, plasma membrane, vacuole
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
Plant-mPloc:plastid
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55535.1 Bra003423.1-P AT3G60600.1 21798944
AT1G55535.1 Bra007547.1-P AT3G60600.1 21798944
AT1G55535.1 Bra014481.1-P AT3G60600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08251 Canola extracellular, mitochondrion, plasma membrane, vacuole 97.96 37.8
CDY26095 Canola extracellular, mitochondrion, plasma membrane, vacuole 94.9 37.65
Bra030853.1-P Field mustard endoplasmic reticulum, mitochondrion, plasma membrane, vacuole 92.86 35.0
AT1G55535.1 Thale cress endoplasmic reticulum, mitochondrion, plasma membrane, vacuole 91.84 34.62
Solyc01g050070.2.1 Tomato extracellular, plasma membrane, vacuole 73.47 32.73
KRH50507 Soybean extracellular, mitochondrion, plasma membrane, vacuole 82.65 32.4
KRG89467 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, vacuole 81.63 32.13
VIT_06s0004g00110.t01 Wine grape mitochondrion 74.49 29.8
Bra027437.1-P Field mustard mitochondrion, plasma membrane 82.65 27.18
GSMUA_Achr4P02350_001 Banana plasma membrane 67.35 26.72
Zm00001d005229_P001 Maize plasma membrane 64.29 26.47
Zm00001d019194_P004 Maize plasma membrane 64.29 25.1
TraesCS2D01G242700.1 Wheat plasma membrane 64.29 25.0
GSMUA_Achr4P10280_001 Banana plasma membrane 76.53 24.83
TraesCS2B01G262900.1 Wheat plasma membrane 63.27 24.6
EER96079 Sorghum extracellular, mitochondrion, plasma membrane, plastid 62.24 24.3
Os07t0223700-00 Rice plasma membrane 64.29 20.39
TraesCS2A01G244700.1 Wheat plasma membrane 64.29 18.69
Protein Annotations
EnsemblPlants:Bra037108.1EnsemblPlants:Bra037108.1-PEnsemblPlantsGene:Bra037108GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR35471TMHMM:TMhelixUniParc:UPI00025476DCUniProt:M4F7P7MapMan:35.2:
Description
AT1G55535 (E=2e-045) | unknown protein
Coordinates
chrA05:+:10139961..10140336
Molecular Weight (calculated)
10872.6 Da
IEP (calculated)
4.711
GRAVY (calculated)
1.033
Length
98 amino acids
Sequence
(BLAST)
1: MLCGSLRDRI QPWLRDYVKL QSLAVILIYA QIGCALIGSL GALYNGVLLI NLVIALFALV AIESNSQSLG RTYAALLFCA LLLDISWFIL FTQEDYIC
Best Arabidopsis Sequence Match ( AT1G55535.3 )
(BLAST)
001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPVSL H
Arabidopsis Description
At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.