CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, vacuole

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	CDX67837	AT3G60600.1	21798944
AT1G55535.1	CDX71796	AT3G60600.1	21798944
AT1G55535.1	CDX89063	AT3G60600.1	21798944
AT1G55535.1	CDY41153	AT3G60600.1	21798944
AT1G55535.1	CDY48365	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	37.8	97.96
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	92.13	94.74
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	87.8	87.11
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	87.01	85.0
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	84.65	67.4
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	64.57	65.86
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	64.17	65.2
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	52.76	60.91
VIT_06s0004g00110.t01	Wine grape	mitochondrion	58.27	60.41
CDY43992	Canola	mitochondrion, plasma membrane	64.17	54.7
GSMUA_Achr4P02350_001	Banana	plasma membrane	50.39	51.82
TraesCS2D01G242700.1	Wheat	plasma membrane	48.82	49.21
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	48.43	49.0
Zm00001d019194_P004	Maize	plasma membrane	48.43	49.0
TraesCS2B01G262900.1	Wheat	plasma membrane	48.43	48.81
Zm00001d005229_P001	Maize	plasma membrane	45.67	48.74
GSMUA_Achr4P10280_001	Banana	plasma membrane	56.3	47.35
Os07t0223700-00	Rice	plasma membrane	47.64	39.16
TraesCS2A01G244700.1	Wheat	plasma membrane	46.06	34.72

Protein Annotations

EnsemblPlants:CDY08251	EnsemblPlantsGene:GSBRNA2T00125578001	GO:A0A078F4D8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	ProteinID:CDY08251	ProteinID:CDY08251.1	TMHMM:TMhelix	UniParc:UPI0004EF22CA	UniProt:A0A078F4D8
MapMan:35.2	:	:	:	:	:

Description

BnaA05g13680DBnaA05g13680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4D8]

Coordinates

chrLK031984:-:374699..376569

Molecular Weight (calculated)

27905.6 Da

IEP (calculated)

4.590

GRAVY (calculated)

0.272

Length

254 amino acids

Sequence
(BLAST)

001: MLCGSLRDRI QPWLRDYVKL QSLAVILIYA QIGCALIGSL GALYNGVLLI NLVIALFALV AIESNSQSLG RTYAALLFCA LLLDISWFIL FTQEIWSISA
101: ETYGTFFVFS VKLTMAMEMV GFFVRLSSSL LWFQIYRLGA SIVDTSLPRE PDSDLRNSFL NPPTPAIDRQ CSGAEEILGG SIYDHAYYAS LFEEAEAQSN
201: LSSPNATQLN HYSAENNGLP SAAEASQIKS PTSRSLHVID EEKGLKQPPG MSSL

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.