Factsheet for GSMUA_Achr4P02350_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT1G55535.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT1G55535.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT1G55535.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT1G55535.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	26.72	67.35
GSMUA_Achr4P10280_001	Banana	plasma membrane	78.54	64.24
TraesCS2D01G242700.1	Wheat	plasma membrane	64.37	63.1
Zm00001d019194_P004	Maize	plasma membrane	63.56	62.55
TraesCS2B01G262900.1	Wheat	plasma membrane	63.56	62.3
Zm00001d005229_P001	Maize	plasma membrane	59.92	62.18
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	62.75	61.75
VIT_06s0004g00110.t01	Wine grape	mitochondrion	61.13	61.63
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	50.61	56.82
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	53.85	53.41
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	53.44	52.8
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	52.63	52.63
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	52.63	50.78
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	51.82	50.39
Os07t0223700-00	Rice	plasma membrane	62.75	50.16
Bra030853.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	52.63	50.0
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	52.23	49.62
AT3G13420.3	Thale cress	mitochondrion	48.58	45.45
TraesCS2A01G244700.1	Wheat	plasma membrane	58.7	43.03
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	51.42	39.81
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	46.56	38.59
CDY43992	Canola	mitochondrion, plasma membrane	46.56	38.59

Protein Annotations

EnsemblPlants:GSMUA_Achr4P02350_001	EnsemblPlants:GSMUA_Achr4T02350_001	EnsemblPlantsGene:GSMUA_Achr4G02350_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	TMHMM:TMhelix	UniParc:UPI000295A278	UniProt:M0SKF2	MapMan:35.2	:

Description

Conserved conserved hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G02350_001]

Coordinates

chr4:+:2089145..2094810

Molecular Weight (calculated)

27673.3 Da

IEP (calculated)

5.190

GRAVY (calculated)

0.340

Length

247 amino acids

Sequence
(BLAST)

001: MPCCSSSLGS RIRSWLHDYD CLQSVAVVLI YVQIGCALVG SLGALFNGVL LINLVVALFA LVAIESSSQI LGRTYAVLLV FSILLDVAWF ILFSHTIWNM
101: TPDQKFGPLF VFSLRLALWM EIIGFSVRFL SSFLWIQMYR LGVSTVDSTI HHVDYSVRNS FVNPSTQITR QNSTSDEILG GAIYDPSYYS SLFEDTQDKQ
201: CLPEDDNQNV HDSHSSSEIE APKLKSCISR SFQVIDVDNA LRKPLLQ

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.