Factsheet for Bra030853.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 2
plasma membrane 3
nucleus 1
extracellular 1
vacuole 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
PTS1:	peroxisome
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	Bra003423.1-P	AT3G60600.1	21798944
AT1G55535.1	Bra007547.1-P	AT3G60600.1	21798944
AT1G55535.1	Bra014481.1-P	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	94.23	95.7
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	35.0	92.86
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	84.62	84.62
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	63.46	66.27
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	63.08	65.6
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	53.08	62.73
VIT_06s0004g00110.t01	Wine grape	mitochondrion	58.46	62.04
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	63.85	55.7
GSMUA_Achr4P02350_001	Banana	plasma membrane	50.0	52.63
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	50.0	51.79
Zm00001d019194_P004	Maize	plasma membrane	50.0	51.79
TraesCS2D01G242700.1	Wheat	plasma membrane	50.0	51.59
Zm00001d005229_P001	Maize	plasma membrane	46.92	51.26
TraesCS2B01G262900.1	Wheat	plasma membrane	49.62	51.19
GSMUA_Achr4P10280_001	Banana	plasma membrane	55.38	47.68
Os07t0223700-00	Rice	plasma membrane	47.69	40.13
TraesCS2A01G244700.1	Wheat	plasma membrane	46.54	35.91

Protein Annotations

EnsemblPlants:Bra030853.1	EnsemblPlants:Bra030853.1-P	EnsemblPlantsGene:Bra030853	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002547064	UniProt:M4EPY2	MapMan:35.2

Description

AT1G55535 (E=2e-112) | unknown protein

Coordinates

chrA08:+:314739..316238

Molecular Weight (calculated)

28684.5 Da

IEP (calculated)

4.610

GRAVY (calculated)

0.291

Length

260 amino acids

Sequence
(BLAST)

001: MMLCGSLRDR IQPWLRDYVK LQSLAVFLIY IQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: VETYGTLYIF SVRLTMAMEM IGFFVRLSSS LLWFQIYRLG ASIVDTSSSL PRETDSDLRN SFLNPPTPAI IDRQCSGAAE EILGGSIYDP AYYTSLFEDA
201: EAQSNLNSPK VTQVNHYSAE YNGSPSAAEA SRIKSPGSRS LHAIDEEKGL KQQVISSSSL

Best Arabidopsis Sequence Match ( AT1G55535.3 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPVSL H

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.