Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- plasma membrane 3
- plastid 1
- extracellular 1
- vacuole 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55535.1 | KRH65384 | AT3G60600.1 | 21798944 |
| AT1G55535.1 | KRH76164 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50507 | Soybean | extracellular, mitochondrion, plasma membrane, vacuole | 91.16 | 90.8 |
| Bra037108.1-P | Field mustard | extracellular, mitochondrion, plasma membrane, vacuole | 32.13 | 81.63 |
| VIT_06s0004g00110.t01 | Wine grape | mitochondrion | 65.06 | 66.12 |
| CDY26095 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 65.46 | 65.99 |
| Solyc01g050070.2.1 | Tomato | extracellular, plasma membrane, vacuole | 57.83 | 65.45 |
| CDY08251 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 65.86 | 64.57 |
| CDY56020 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 65.46 | 63.67 |
| Bra030853.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 66.27 | 63.46 |
| AT1G55535.1 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 66.27 | 63.46 |
| AT3G13420.3 | Thale cress | mitochondrion | 57.43 | 54.17 |
| GSMUA_Achr4P02350_001 | Banana | plasma membrane | 53.41 | 53.85 |
| Zm00001d005229_P001 | Maize | plasma membrane | 49.4 | 51.68 |
| TraesCS2B01G262900.1 | Wheat | plasma membrane | 52.21 | 51.59 |
| TraesCS2D01G242700.1 | Wheat | plasma membrane | 52.21 | 51.59 |
| Zm00001d019194_P004 | Maize | plasma membrane | 51.81 | 51.39 |
| EER96079 | Sorghum | extracellular, mitochondrion, plasma membrane, plastid | 51.41 | 51.0 |
| CDY10553 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 64.66 | 50.47 |
| GSMUA_Achr4P10280_001 | Banana | plasma membrane | 59.44 | 49.01 |
| CDY43992 | Canola | mitochondrion, plasma membrane | 55.82 | 46.64 |
| Bra027437.1-P | Field mustard | mitochondrion, plasma membrane | 55.82 | 46.64 |
| Os07t0223700-00 | Rice | plasma membrane | 50.6 | 40.78 |
| TraesCS2A01G244700.1 | Wheat | plasma membrane | 49.0 | 36.2 |
Protein Annotations
| EMBL:ACUP02012210 | EnsemblPlants:KRG89467 | EnsemblPlantsGene:GLYMA_20G024900 | EntrezGene:100776559 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR35471 | ProteinID:KRG89467 | ProteinID:KRG89467.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000233DE90 | UniProt:I1NDH4 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:2683970..2695990
Molecular Weight (calculated)
27752.2 Da
IEP (calculated)
4.686
GRAVY (calculated)
0.217
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLCGSFCLN LRDRIQQWIR DYDRLQSFAV ILIYLQIGCA LIGSLGASYN GVSLVNLAIA LFALVAIESS SQSLGRTYAF LLFCAILLDI SWFILFANEI
101: WNISTKYYTT FFTFSVKLTL AMQIVGFTVR LSSSLLWIQI YRLGASYVNA ASRAADSDLR SSFLSPMTPA VARQCSNSNE ILGGSIYDPS YYSSLFEDAQ
201: ENKYSSEMEN HETTQNESTS SAEVSLKSTM GRSFQAADEE NGLIKKEIV
101: WNISTKYYTT FFTFSVKLTL AMQIVGFTVR LSSSLLWIQI YRLGASYVNA ASRAADSDLR SSFLSPMTPA VARQCSNSNE ILGGSIYDPS YYSSLFEDAQ
201: ENKYSSEMEN HETTQNESTS SAEVSLKSTM GRSFQAADEE NGLIKKEIV
001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI
Arabidopsis Description
At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.