Factsheet for Zm00001d048122_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007647_P001
Zm00001d008982_P001
Zm00001d010806_P001
Zm00001d012776_P001
Zm00001d016021_P001
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020729_P001
Zm00001d025321_P001
Zm00001d037453_P001
Zm00001d038756_P001
Zm00001d038768_P001
Zm00001d039316_P001
Zm00001d043551_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	Zm00001d007647_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d010806_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d016021_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d025321_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d038756_P001	AT2G20130.1	21798944
AT5G01430.1	Zm00001d008982_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d012776_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d016041_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d020229_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d020729_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d037453_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d038768_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d039316_P001	AT4G11220.1	21798944
AT5G01430.1	Zm00001d043551_P003	AT4G11220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0209400-01	Rice	plasma membrane	68.16	97.86
Zm00001d028040_P002	Maize	plasma membrane	67.66	97.14
TraesCS4D01G252900.1	Wheat	plasma membrane	67.16	96.43
TraesCS4B01G252600.1	Wheat	plasma membrane	67.16	96.43
TraesCS4A01G051600.1	Wheat	plasma membrane	67.16	96.43
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	62.19	89.29
GSMUA_AchrUn_...	Banana	plasma membrane	59.7	85.71
PGSC0003DMT400054623	Potato	plasma membrane	56.72	84.44
GSMUA_Achr4P06120_001	Banana	plasma membrane	58.21	83.57
PGSC0003DMT400062004	Potato	plasma membrane	58.21	83.57
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	57.71	82.86
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	56.72	81.43
CDX80773	Canola	plasma membrane	55.72	80.0
KRH73542	Soybean	extracellular, plasma membrane, vacuole	55.72	80.0
CDY11201	Canola	plasma membrane	55.22	79.29
Bra005686.1-P	Field mustard	plasma membrane	55.22	79.29
KRH14583	Soybean	extracellular, plasma membrane, vacuole	55.22	79.29
KRH50610	Soybean	extracellular, plasma membrane, vacuole	55.22	79.29
AT3G49420.2	Thale cress	plasma membrane	54.73	78.57
AT5G01430.1	Thale cress	plasma membrane	54.73	78.57
CDY04837	Canola	plasma membrane	54.23	77.86
Bra028903.1-P	Field mustard	plasma membrane	54.23	77.86
CDY21217	Canola	plasma membrane	53.23	76.43
CDY49931	Canola	plasma membrane	50.25	74.81
Zm00001d022026_P001	Maize	cytosol, plasma membrane, vacuole	49.75	69.93
Bra021367.1-P	Field mustard	plasma membrane	48.76	66.22
Zm00001d037011_P001	Maize	extracellular	20.9	64.62
HORVU4Hr1G069200.3	Barley	plastid	69.65	64.52
KRG89688	Soybean	plasma membrane	56.22	58.55
Zm00001d051009_P002	Maize	plasma membrane	34.83	51.85
AT3G03180.3	Thale cress	plasma membrane	48.76	51.04

Protein Annotations

EnsemblPlants:Zm00001d048122_P003	EnsemblPlants:Zm00001d048122_T003	EnsemblPlantsGene:Zm00001d048122	EntrezGene:100273877	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	PANTHER:PTHR21493
PANTHER:PTHR21493:SF9	PFAM:PF04178	ProteinID:AQL08891.1	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI00084573DD	UniProt:A0A1D6PHT9	MapMan:35.1	:	:	:

Description

Got1/Sft2-like vescicle transport protein family

Coordinates

chr9:+:150492033..150495368

Molecular Weight (calculated)

22448.8 Da

IEP (calculated)

8.730

GRAVY (calculated)

0.645

Length

201 amino acids

Sequence
(BLAST)

001: MQFCAASRFK GTVLWKWYLV TFSCVGFCVA ASECHCYPSP DNMVSFEMND LKKIGLGLTG FGIFFSFLGI IFFFDKGLIA MGNILFLSGL GLTIGLKSTM
101: QFFTKPKNYK VGLHSALDGG SDEQDLMGTI SFGAGFFLVL IGWPFLGMLL EAYGFVVLFS FSGFWPTLAV FLQRIPIIGW IFQQPFVTSF LDRYRGKRVP
201: V

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.