CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	extracellular, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49931	Canola	plasma membrane	94.29	97.78
Bra021367.1-P	Field mustard	plasma membrane	93.57	88.51
PGSC0003DMT400054623	Potato	plasma membrane	75.71	78.52
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	77.14	77.14
TraesCS4B01G252600.1	Wheat	plasma membrane	76.43	76.43
TraesCS4A01G051600.1	Wheat	plasma membrane	76.43	76.43
TraesCS4D01G252900.1	Wheat	plasma membrane	76.43	76.43
CDX80773	Canola	plasma membrane	76.43	76.43
Os03t0209400-01	Rice	plasma membrane	75.71	75.71
CDY11201	Canola	plasma membrane	75.71	75.71
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	75.0	75.0
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	75.0	75.0
Zm00001d028040_P002	Maize	plasma membrane	74.29	74.29
CDY04837	Canola	plasma membrane	73.57	73.57
PGSC0003DMT400062004	Potato	plasma membrane	72.86	72.86
GSMUA_Achr4P06120_001	Banana	plasma membrane	72.14	72.14
GSMUA_AchrUn_...	Banana	plasma membrane	68.57	68.57
Os10t0337600-01	Rice	extracellular, plasma membrane, vacuole	67.86	67.86
EER97480	Sorghum	plasma membrane	65.0	65.0
AT3G03180.3	Thale cress	plasma membrane	88.57	64.58
Zm00001d022026_P001	Maize	cytosol, plasma membrane, vacuole	65.0	63.64
TraesCS2D01G191300.1	Wheat	plasma membrane	63.57	63.57
Os07t0593400-00	Rice	extracellular, plasma membrane	45.71	57.66
Zm00001d037011_P001	Maize	extracellular	26.43	56.92
TraesCS2B01G210100.1	Wheat	cytosol, plasma membrane, vacuole	62.86	55.7
Zm00001d048122_P003	Maize	plasma membrane	76.43	53.23
HORVU4Hr1G069200.3	Barley	plastid	76.43	49.31
HORVU2Hr1G034610.1	Barley	extracellular	53.57	46.88

Protein Annotations

EnsemblPlants:CDY21217	EnsemblPlantsGene:GSBRNA2T00015429001	GO:A0A078G867	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	PANTHER:PTHR21493	PANTHER:PTHR21493:SF97
PFAM:PF04178	ProteinID:CDY21217	ProteinID:CDY21217.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE448B
UniProt:A0A078G867	MapMan:35.1	:	:	:	:

Description

BnaA01g34480DBnaA01g34480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G867]

Coordinates

chrLK032116:-:670737..671784

Molecular Weight (calculated)

15769.0 Da

IEP (calculated)

11.274

GRAVY (calculated)

0.852

Length

140 amino acids

Sequence
(BLAST)

001: MASFEMNDLK KIGLGLTGFG VFFTFLGVIF VFDKGLIAMG NILFLAGVTL TIGIQPAIQF FTKRRNFKGT ISFGLGFLLV VFGWPILGLL LESYGFLVLF
101: SGFWPTLAVF LQRIPILGWL LQHPYIRSLL DRYRGRRVPV

Best Arabidopsis Sequence Match ( AT3G03180.1 )
(BLAST)

001: MASLEMNDLK KIGLGLTGFG VFFTFLGVIF VFDKGLIAMG NILFLAGVTL TIGINPAIQF FTKRQNFKGT ISFGLGFLLV VFGWPIFGLL LESYGFLVLF
101: SGFWPTLAVF LQRIPLLGWL LQQPYIRSLL DRYRGRRVPV

Arabidopsis Description

Got1/Sft2-like vescicle transport protein family [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRD1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.