Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- extracellular 2
- plasma membrane 4
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21217 | Canola | plasma membrane | 64.58 | 88.57 |
| CDY49931 | Canola | plasma membrane | 61.46 | 87.41 |
| Bra021367.1-P | Field mustard | plasma membrane | 65.62 | 85.14 |
| PGSC0003DMT400054623 | Potato | plasma membrane | 51.56 | 73.33 |
| TraesCS4B01G252600.1 | Wheat | plasma membrane | 52.08 | 71.43 |
| TraesCS4A01G051600.1 | Wheat | plasma membrane | 52.08 | 71.43 |
| TraesCS4D01G252900.1 | Wheat | plasma membrane | 52.08 | 71.43 |
| Solyc02g069610.2.1 | Tomato | extracellular, plasma membrane, vacuole | 52.08 | 71.43 |
| AT3G49420.2 | Thale cress | plasma membrane | 51.56 | 70.71 |
| Os03t0209400-01 | Rice | plasma membrane | 51.56 | 70.71 |
| AT5G01430.1 | Thale cress | plasma membrane | 51.56 | 70.71 |
| GSMUA_Achr1P09820_001 | Banana | extracellular, plasma membrane, vacuole | 51.04 | 70.0 |
| EER95301 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 51.04 | 70.0 |
| Zm00001d028040_P002 | Maize | plasma membrane | 50.52 | 69.29 |
| PGSC0003DMT400062004 | Potato | plasma membrane | 49.48 | 67.86 |
| GSMUA_Achr4P06120_001 | Banana | plasma membrane | 48.96 | 67.14 |
| Os10t0337600-01 | Rice | extracellular, plasma membrane, vacuole | 48.96 | 67.14 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 47.4 | 65.0 |
| EER97480 | Sorghum | plasma membrane | 43.23 | 59.29 |
| TraesCS2D01G191300.1 | Wheat | plasma membrane | 43.23 | 59.29 |
| Zm00001d022026_P001 | Maize | cytosol, plasma membrane, vacuole | 43.75 | 58.74 |
| Zm00001d037011_P001 | Maize | extracellular | 18.75 | 55.38 |
| Os07t0593400-00 | Rice | extracellular, plasma membrane | 30.21 | 52.25 |
| TraesCS2B01G210100.1 | Wheat | cytosol, plasma membrane, vacuole | 42.71 | 51.9 |
| Zm00001d048122_P003 | Maize | plasma membrane | 51.04 | 48.76 |
| HORVU2Hr1G034610.1 | Barley | extracellular | 39.58 | 47.5 |
| HORVU4Hr1G069200.3 | Barley | plastid | 52.08 | 46.08 |
| AT1G05785.6 | Thale cress | plasma membrane | 34.38 | 38.15 |
Protein Annotations
| MapMan:35.1 | EntrezGene:821059 | UniProt:A0A1I9LRD1 | ProteinID:ANM65139.1 | ArrayExpress:AT3G03180 | EnsemblPlantsGene:AT3G03180 |
| RefSeq:AT3G03180 | TAIR:AT3G03180 | RefSeq:AT3G03180-TAIR-G | EnsemblPlants:AT3G03180.3 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_001327133.1 | PFAM:PF04178 |
| PANTHER:PTHR21493 | PANTHER:PTHR21493:SF97 | TMHMM:TMhelix | UniParc:UPI0008493777 | InterPro:Vesicle_transpt_Got1/SFT2 | SEG:seg |
Description
Got1/Sft2-like vescicle transport protein family [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRD1]
Coordinates
chr3:+:733384..734631
Molecular Weight (calculated)
21512.3 Da
IEP (calculated)
8.749
GRAVY (calculated)
1.084
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLEMNDLK KIGLGLTGFG VFFTFLGVIF VFDKGLIAMG NILFLAGVTL TIGINPAIQF FTKRQNFKGT ISFGLGFLLV VFGWPIFGLL LESYGFLVLF
101: SGFWPTLAVF LQRIPLLGWL LQQPYIRSVH SLQLLSVLLF RLICLIQSNF YQLYILVTES VAGSLPWKAC PCLNLLCLSF FLFVCELTTI QL
101: SGFWPTLAVF LQRIPLLGWL LQQPYIRSVH SLQLLSVLLF RLICLIQSNF YQLYILVTES VAGSLPWKAC PCLNLLCLSF FLFVCELTTI QL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.