Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0593400-00 | Rice | extracellular, plasma membrane | 69.23 | 40.54 |
| EER97480 | Sorghum | plasma membrane | 81.54 | 37.86 |
| Zm00001d022026_P001 | Maize | cytosol, plasma membrane, vacuole | 81.54 | 37.06 |
| TraesCS2D01G191300.1 | Wheat | plasma membrane | 72.31 | 33.57 |
| GSMUA_Achr1P09820_001 | Banana | extracellular, plasma membrane, vacuole | 67.69 | 31.43 |
| GSMUA_Achr4P06120_001 | Banana | plasma membrane | 66.15 | 30.71 |
| Zm00001d028040_P002 | Maize | plasma membrane | 64.62 | 30.0 |
| TraesCS2B01G210100.1 | Wheat | cytosol, plasma membrane, vacuole | 72.31 | 29.75 |
| HORVU2Hr1G034610.1 | Barley | extracellular | 72.31 | 29.38 |
| VIT_02s0012g00510.t01 | Wine grape | extracellular, plasma membrane, vacuole | 63.08 | 29.29 |
| KRH50610 | Soybean | extracellular, plasma membrane, vacuole | 61.54 | 28.57 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 61.54 | 28.57 |
| CDY11201 | Canola | plasma membrane | 61.54 | 28.57 |
| CDX80773 | Canola | plasma membrane | 61.54 | 28.57 |
| Bra005686.1-P | Field mustard | plasma membrane | 61.54 | 28.57 |
| PGSC0003DMT400054623 | Potato | plasma membrane | 58.46 | 28.15 |
| AT3G49420.2 | Thale cress | plasma membrane | 60.0 | 27.86 |
| CDY04837 | Canola | plasma membrane | 60.0 | 27.86 |
| Bra028903.1-P | Field mustard | plasma membrane | 60.0 | 27.86 |
| AT5G01430.1 | Thale cress | plasma membrane | 60.0 | 27.86 |
| KRH14583 | Soybean | extracellular, plasma membrane, vacuole | 58.46 | 27.14 |
| CDY49931 | Canola | plasma membrane | 55.38 | 26.67 |
| CDY21217 | Canola | plasma membrane | 56.92 | 26.43 |
| PGSC0003DMT400062004 | Potato | plasma membrane | 56.92 | 26.43 |
| Solyc02g069610.2.1 | Tomato | extracellular, plasma membrane, vacuole | 56.92 | 26.43 |
| KRH73542 | Soybean | extracellular, plasma membrane, vacuole | 53.85 | 25.0 |
| Bra021367.1-P | Field mustard | plasma membrane | 56.92 | 25.0 |
| Zm00001d048122_P003 | Maize | plasma membrane | 64.62 | 20.9 |
| KRG89688 | Soybean | plasma membrane | 61.54 | 20.73 |
| Zm00001d051009_P002 | Maize | plasma membrane | 40.0 | 19.26 |
| AT3G03180.3 | Thale cress | plasma membrane | 55.38 | 18.75 |
Protein Annotations
| EnsemblPlants:Zm00001d037011_P001 | EnsemblPlants:Zm00001d037011_T001 | EnsemblPlantsGene:Zm00001d037011 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | PFAM:PF04178 | ProteinID:AQK82668.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000844F973 | UniProt:A0A1D6LTC6 | MapMan:35.2 | : |
Description
Got1/Sft2-like vescicle transport protein family
Coordinates
chr6:-:108976274..108976644
Molecular Weight (calculated)
7195.2 Da
IEP (calculated)
10.374
GRAVY (calculated)
1.014
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MMGSILFVSG VLLTIGSKPT VQFFTKPKDH KGSIFFGFGF FLVLIGWPAL GIMVDSYGFI MLFKL
001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
Arabidopsis Description
At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.