CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
extracellular 2
plasma membrane 4
vacuole 2
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89811
EES19841
EES19854
KXG31516
KXG33320
OQU84758
OQU84787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	EES19854	AT2G20130.1	21798944
AT5G01430.1	OQU84787	AT2G20130.1	21798944
AT5G01430.1	EER89811	AT4G11220.1	21798944
AT5G01430.1	EES19841	AT4G11220.1	21798944
AT5G01430.1	KXG31516	AT4G11220.1	21798944
AT5G01430.1	KXG33320	AT4G11220.1	21798944
AT5G01430.1	OQU84758	AT4G11220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022026_P001	Maize	cytosol, plasma membrane, vacuole	94.29	92.31
TraesCS2D01G191300.1	Wheat	plasma membrane	83.57	83.57
Os07t0593400-00	Rice	extracellular, plasma membrane	65.71	82.88
Zm00001d037011_P001	Maize	extracellular	37.86	81.54
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	76.43	76.43
TraesCS2B01G210100.1	Wheat	cytosol, plasma membrane, vacuole	82.86	73.42
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	72.14	72.14
KRH50610	Soybean	extracellular, plasma membrane, vacuole	72.14	72.14
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	71.43	71.43
PGSC0003DMT400054623	Potato	plasma membrane	67.14	69.63
GSMUA_AchrUn_...	Banana	plasma membrane	69.29	69.29
PGSC0003DMT400062004	Potato	plasma membrane	69.29	69.29
GSMUA_Achr4P06120_001	Banana	plasma membrane	69.29	69.29
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	68.57	68.57
CDY11201	Canola	plasma membrane	67.86	67.86
AT3G49420.2	Thale cress	plasma membrane	67.86	67.86
AT5G01430.1	Thale cress	plasma membrane	67.86	67.86
Bra005686.1-P	Field mustard	plasma membrane	67.86	67.86
Bra028903.1-P	Field mustard	plasma membrane	67.86	67.86
CDX80773	Canola	plasma membrane	67.86	67.86
CDY04837	Canola	plasma membrane	67.86	67.86
KRH73542	Soybean	extracellular, plasma membrane, vacuole	67.86	67.86
KRH14583	Soybean	extracellular, plasma membrane, vacuole	67.86	67.86
CDY21217	Canola	plasma membrane	65.0	65.0
CDY49931	Canola	plasma membrane	62.14	64.44
HORVU2Hr1G034610.1	Barley	extracellular	71.43	62.5
Bra021367.1-P	Field mustard	plasma membrane	60.71	57.43
KRG89688	Soybean	plasma membrane	72.14	52.33
EES05385	Sorghum	plasma membrane	42.86	44.44
AT3G03180.3	Thale cress	plasma membrane	59.29	43.23

Protein Annotations

EnsemblPlants:EER97480	EnsemblPlantsGene:SORBI_3002G362000	EntrezGene:8078992	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	PANTHER:PTHR21493	PANTHER:PTHR21493:SF9
PFAM:PF04178	ProteinID:EER97480	ProteinID:EER97480.1	RefSeq:XP_002460959.1	SEG:seg	TMHMM:TMhelix
unigene:Sbi.10022	UniParc:UPI0001A8383A	UniProt:C5XD65	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr2:+:72334466..72337522

Molecular Weight (calculated)

15616.7 Da

IEP (calculated)

11.242

GRAVY (calculated)

0.704

Length

140 amino acids

Sequence
(BLAST)

001: MVSFEMNDRK KIGLGLTGFG VLFSLLGIIM LFDKGFLAMG NILFVSGVLL TIGLKPTVQF FTKPKNHKGS LSFGFGFFLV LIGWPILGMM VESYGFITLF
101: SGFWPTAAVY LQKSPSFGWI FHHPLVTSLI TRFRGRRVPV

Best Arabidopsis Sequence Match ( AT5G01430.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.