CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

plastid 1
nucleus 1
extracellular 2
plasma membrane 3
vacuole 3
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH39309
KRH41254
KRH42923
KRH42926
KRH45251
KRH48364
KRH59035
KRH59036
KRH59988

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01430.1	KRH39309	AT2G20130.1	21798944
AT5G01430.1	KRH48364	AT2G20130.1	21798944
AT5G01430.1	KRH41254	AT4G11220.1	21798944
AT5G01430.1	KRH59988	AT4G11220.1	21798944
AT5G01430.1	KRH11076	AT4G19030.1	21798944
AT5G01430.1	KRH21197	AT4G19030.1	21798944
AT5G01430.1	KRH42923	AT4G19030.1	21798944
AT5G01430.1	KRH42926	AT4G19030.1	21798944
AT5G01430.1	KRH45251	AT4G19030.1	21798944
AT5G01430.1	KRH59035	AT4G19030.1	21798944
AT5G01430.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14583	Soybean	extracellular, plasma membrane, vacuole	95.0	95.0
KRH50610	Soybean	extracellular, plasma membrane, vacuole	90.71	90.71
PGSC0003DMT400054623	Potato	plasma membrane	82.14	85.19
Solyc02g069610.2.1	Tomato	extracellular, plasma membrane, vacuole	84.29	84.29
VIT_02s0012g00510.t01	Wine grape	extracellular, plasma membrane, vacuole	83.57	83.57
PGSC0003DMT400062004	Potato	plasma membrane	82.86	82.86
AT5G01430.1	Thale cress	plasma membrane	81.43	81.43
GSMUA_Achr1P09820_001	Banana	extracellular, plasma membrane, vacuole	81.43	81.43
AT3G49420.2	Thale cress	plasma membrane	81.43	81.43
TraesCS4D01G252900.1	Wheat	plasma membrane	78.57	78.57
TraesCS4B01G252600.1	Wheat	plasma membrane	78.57	78.57
TraesCS4A01G051600.1	Wheat	plasma membrane	78.57	78.57
Os03t0209400-01	Rice	plasma membrane	78.57	78.57
Bra005686.1-P	Field mustard	plasma membrane	78.57	78.57
EER95301	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	78.57	78.57
Bra028903.1-P	Field mustard	plasma membrane	78.57	78.57
CDY11201	Canola	plasma membrane	78.57	78.57
CDY04837	Canola	plasma membrane	78.57	78.57
Zm00001d028040_P002	Maize	plasma membrane	77.86	77.86
CDX80773	Canola	plasma membrane	77.86	77.86
GSMUA_AchrUn_...	Banana	plasma membrane	77.14	77.14
GSMUA_Achr4P06120_001	Banana	plasma membrane	75.71	75.71
Os10t0337600-01	Rice	extracellular, plasma membrane, vacuole	72.14	72.14
EER97480	Sorghum	plasma membrane	67.86	67.86
TraesCS2D01G191300.1	Wheat	plasma membrane	67.86	67.86
KRG89688	Soybean	plasma membrane	92.14	66.84
Zm00001d022026_P001	Maize	cytosol, plasma membrane, vacuole	65.0	63.64
Os07t0593400-00	Rice	extracellular, plasma membrane	49.29	62.16
TraesCS2B01G210100.1	Wheat	cytosol, plasma membrane, vacuole	67.14	59.49
Zm00001d048122_P003	Maize	plasma membrane	80.0	55.72
Zm00001d037011_P001	Maize	extracellular	25.0	53.85
HORVU2Hr1G034610.1	Barley	extracellular	58.57	51.25
HORVU4Hr1G069200.3	Barley	plastid	79.29	51.15
KRH46892	Soybean	plasma membrane	49.29	49.64
KRH01801	Soybean	endoplasmic reticulum, plasma membrane	48.57	39.08

Protein Annotations

EMBL:ACUP02001280	EMBL:BT092752	EnsemblPlants:KRH73542	EnsemblPlantsGene:GLYMA_02G279400	EntrezGene:100527869	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2
PANTHER:PTHR21493	PANTHER:PTHR21493:SF9	PFAM:PF04178	ProteinID:KRH73542	ProteinID:KRH73542.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0001B15ECA	UniProt:C6T5P0	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr2:-:46164074..46168118

Molecular Weight (calculated)

15858.1 Da

IEP (calculated)

11.230

GRAVY (calculated)

0.804

Length

140 amino acids

Sequence
(BLAST)

001: MVSFEMNDRK KIGLGLTGFG IFFSFLGIIF FFDKGLLAMG NVLFVSGVSI TIGLKSTMQF FMKRSNFKGT ISFGVGFFIL IMGWPIVGMI VEAYGFVVLF
101: SGFWPTLAVF LQKIPVLGWL FQQPFVRSLF DRYRGKRMPV

Best Arabidopsis Sequence Match ( AT3G49420.1 )
(BLAST)

001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV

Arabidopsis Description

At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.