Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 7
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g069610.2.1 | Tomato | extracellular, plasma membrane, vacuole | 98.52 | 95.0 |
| PGSC0003DMT400062004 | Potato | plasma membrane | 91.85 | 88.57 |
| AT3G49420.2 | Thale cress | plasma membrane | 85.93 | 82.86 |
| AT5G01430.1 | Thale cress | plasma membrane | 85.93 | 82.86 |
| VIT_02s0012g00510.t01 | Wine grape | extracellular, plasma membrane, vacuole | 85.93 | 82.86 |
| KRH14583 | Soybean | extracellular, plasma membrane, vacuole | 85.19 | 82.14 |
| KRH73542 | Soybean | extracellular, plasma membrane, vacuole | 85.19 | 82.14 |
| CDX80773 | Canola | plasma membrane | 84.44 | 81.43 |
| CDY11201 | Canola | plasma membrane | 83.7 | 80.71 |
| Bra005686.1-P | Field mustard | plasma membrane | 83.7 | 80.71 |
| TraesCS4D01G252900.1 | Wheat | plasma membrane | 83.7 | 80.71 |
| TraesCS4B01G252600.1 | Wheat | plasma membrane | 83.7 | 80.71 |
| TraesCS4A01G051600.1 | Wheat | plasma membrane | 83.7 | 80.71 |
| Os03t0209400-01 | Rice | plasma membrane | 83.7 | 80.71 |
| KRH50610 | Soybean | extracellular, plasma membrane, vacuole | 83.7 | 80.71 |
| CDY04837 | Canola | plasma membrane | 82.22 | 79.29 |
| EER95301 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 82.22 | 79.29 |
| Bra028903.1-P | Field mustard | plasma membrane | 82.22 | 79.29 |
| Zm00001d028040_P002 | Maize | plasma membrane | 81.48 | 78.57 |
| GSMUA_Achr1P09820_001 | Banana | extracellular, plasma membrane, vacuole | 80.74 | 77.86 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 80.0 | 77.14 |
| CDY49931 | Canola | plasma membrane | 77.04 | 77.04 |
| CDY21217 | Canola | plasma membrane | 78.52 | 75.71 |
| GSMUA_Achr4P06120_001 | Banana | plasma membrane | 76.3 | 73.57 |
| Os10t0337600-01 | Rice | extracellular, plasma membrane, vacuole | 75.56 | 72.86 |
| TraesCS2D01G191300.1 | Wheat | plasma membrane | 70.37 | 67.86 |
| EER97480 | Sorghum | plasma membrane | 69.63 | 67.14 |
| Bra021367.1-P | Field mustard | plasma membrane | 72.59 | 66.22 |
| Os07t0593400-00 | Rice | extracellular, plasma membrane | 52.59 | 63.96 |
| Zm00001d022026_P001 | Maize | cytosol, plasma membrane, vacuole | 65.93 | 62.24 |
| TraesCS2B01G210100.1 | Wheat | cytosol, plasma membrane, vacuole | 69.63 | 59.49 |
| KRG89688 | Soybean | plasma membrane | 83.7 | 58.55 |
| Zm00001d037011_P001 | Maize | extracellular | 28.15 | 58.46 |
| Zm00001d048122_P003 | Maize | plasma membrane | 84.44 | 56.72 |
| HORVU4Hr1G069200.3 | Barley | plastid | 84.44 | 52.53 |
| HORVU2Hr1G034610.1 | Barley | extracellular | 61.48 | 51.88 |
| AT3G03180.3 | Thale cress | plasma membrane | 73.33 | 51.56 |
| PGSC0003DMT400055667 | Potato | extracellular, plasma membrane, vacuole | 48.15 | 50.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400054623 | EnsemblPlantsGene:PGSC0003DMG400021199 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | PANTHER:PTHR21493 | PANTHER:PTHR21493:SF9 | PFAM:PF04178 |
| PGSC:PGSC0003DMG400021199 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000294BBD2 | UniProt:M1BWM5 | MapMan:35.1 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021199]
Coordinates
chr2:+:28723999..28728504
Molecular Weight (calculated)
15262.2 Da
IEP (calculated)
11.245
GRAVY (calculated)
0.802
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDRKKIGLG LTGFGVFFSF LGIIFFFDKG LIAMGNILFF SGVALTIGLK SSLQFFSKRS NFKGTISFGV GFFLVIIGWP ILGMILEAYG FVVLFSGFWP
101: TLAVFLQKIP ILGWIFQQPY IRSFFDRYRG KRVPV
101: TLAVFLQKIP ILGWIFQQPY IRSFFDRYRG KRVPV
001: MMSFEMNDRK KIGLGLTGFG VFFSFLGIVF VFDKGLLAMG NILFISGVSL TIGFKSTMQF FMKRQNYKGT ISFGVGFFFV IIGWPILGMM LETYGFFVLF
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
101: SGFWPTLAVF AQKIPVLGWI IQQPYIRSFF DKYRGKRVPV
Arabidopsis Description
At3g49420 [Source:UniProtKB/TrEMBL;Acc:Q9SCL4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.