Factsheet for PGSC0003DMT400000833

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane, peroxisome

Predictor Summary:

plastid 2
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane, plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000833
PGSC0003DMT400006409
PGSC0003DMT400007183
PGSC0003DMT400022726
PGSC0003DMT400028790
PGSC0003DMT400068658

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	PGSC0003DMT400000833	AT2G20130.1	21798944
AT2G20130.1	PGSC0003DMT400006409	AT3G13710.1	21798944
AT2G20130.1	PGSC0003DMT400007183	AT4G02080.1	21798944
AT2G20130.1	PGSC0003DMT400068658	AT4G02080.1	21798944
AT2G20130.1	PGSC0003DMT400022726	AT5G02040.1	21798944
AT2G20130.1	PGSC0003DMT400028790	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007130.1.1	Tomato	plasma membrane	96.48	96.48
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	84.38	81.51
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	83.59	80.75
VIT_11s0016g03780.t01	Wine grape	plasma membrane	83.2	80.08
GSMUA_Achr6P22910_001	Banana	plasma membrane	77.73	77.43
AT2G20130.1	Thale cress	plasma membrane	77.34	77.34
CDY50615	Canola	plasma membrane	76.95	76.06
GSMUA_Achr10P...	Banana	plasma membrane	79.69	75.0
Bra013250.1-P	Field mustard	plasma membrane	78.12	74.63
CDX93027	Canola	plasma membrane	78.12	74.63
CDY05723	Canola	plasma membrane	76.17	74.43
CDY31990	Canola	plasma membrane	76.95	74.34
Bra041043.1-P	Field mustard	plasma membrane	76.95	74.34
CDY69713	Canola	plasma membrane	75.39	73.95
AT2G20120.1	Thale cress	plasma membrane	77.34	73.88
CDY46483	Canola	plasma membrane	75.39	73.66
Bra015065.1-P	Field mustard	plasma membrane	75.39	73.38
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	78.12	73.26
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	76.95	72.16
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	77.34	72.0
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	76.56	71.79
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	76.56	71.79
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	75.39	70.44
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	75.0	70.33
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	74.61	66.78
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	74.61	66.78
PGSC0003DMT400038585	Potato	extracellular	67.97	64.93
Zm00001d016021_P001	Maize	plasma membrane	69.92	64.39
Os02t0269000-01	Rice	plasma membrane	73.05	64.26
PGSC0003DMT400050735	Potato	plasma membrane	62.89	63.39
PGSC0003DMT400016307	Potato	golgi, peroxisome, plasma membrane	64.45	61.34
HORVU1Hr1G081700.1	Barley	mitochondrion	76.17	58.04
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	69.53	49.31
PGSC0003DMT400016276	Potato	endoplasmic reticulum, nucleus, plasma membrane	62.5	48.34
Zm00001d007647_P001	Maize	mitochondrion	20.7	36.81
Zm00001d025321_P001	Maize	mitochondrion	20.7	36.81

Protein Annotations

EnsemblPlants:PGSC0003DMT400000833	EnsemblPlantsGene:PGSC0003DMG400000309	EntrezGene:102595014	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	PFAM:PF04367	PGSC:PGSC0003DMG400000309	RefSeq:XP_006353462.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000295BEE7	UniProt:M0ZHE6	MapMan:35.1	:

Description

CONTINUOUS VASCULAR RING [Source:PGSC_GENE;Acc:PGSC0003DMG400000309]

Coordinates

chr12:+:4454734..4462067

Molecular Weight (calculated)

28271.9 Da

IEP (calculated)

6.878

GRAVY (calculated)

0.202

Length

256 amino acids

Sequence
(BLAST)

001: MANSNRDREL LIPVANTGAG DDGASDKPSS SSSSSSSHHH SGRETFSKVV RSWASKKFMT GCVILFPIAV TFYITWWFIH FVDGFFSPIY AQLGIDVFGL
101: GFMTSITFIF LVGVFMSSWL GTSVLGLGEW FIKRMPFVRH IYNASKQISS AISPDQNTQA FKEVAIIRHP RIGEYAFGFI TSSVVLQNYS GDEELCCVYV
201: PTNHLYIGDI FLVNAKDVIR PNLSVREGIE IVVSGGMSMP QILSTLDPGS IQVDRS

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.