Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- plasma membrane 3
- plastid 1
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g071710.2.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 65.26 | 83.4 |
| Bra014012.1-P | Field mustard | peroxisome | 57.4 | 73.08 |
| CDY36014 | Canola | peroxisome | 57.4 | 73.08 |
| CDY47858 | Canola | peroxisome | 57.1 | 72.69 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 56.5 | 71.65 |
| PGSC0003DMT400050735 | Potato | plasma membrane | 53.47 | 69.69 |
| PGSC0003DMT400000833 | Potato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 48.34 | 62.5 |
| PGSC0003DMT400038585 | Potato | extracellular | 42.6 | 52.61 |
| PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 39.88 | 49.07 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016276 | EnsemblPlantsGene:PGSC0003DMG400006362 | EntrezGene:102584144 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF4 | PFAM:PF04367 | PGSC:PGSC0003DMG400006362 | TMHMM:TMhelix |
| UniParc:UPI000294FA5C | UniProt:M1A7E4 | MapMan:35.1 | : | : | : |
Description
COV1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006362]
Coordinates
chr4:-:60542741..60549618
Molecular Weight (calculated)
37570.9 Da
IEP (calculated)
6.097
GRAVY (calculated)
0.012
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDKKESTS SSPLRNESLH EDPEDFVKSP PSSPNSSTRK ACYAVLQSWV SKKFMTGCVV LFPVAVTFFI TWWFIQFVDG FFSPIYERLG IDIFGLGFVT
101: SITFIFFVGI FASSWLGSTV FWLGEWFIKR MPFVKHLYSA SKQISSAISP DQNTNAFKEV AIIRHPRIGE YAIGFITSSV VLQRDDGDEE LCSIFVPTNH
201: LYIGDVFLVN SNDIIRPNLS VREGIEGFFI EMPCLVDNIL SVDCPTMVER MRLSPCMVGQ YSPHELAFES KLGLRDHCLC GNVNATGDFS YRKDHKTERP
301: DPSKQNVKVN RILFSRAYDL LALSYHSFTF E
101: SITFIFFVGI FASSWLGSTV FWLGEWFIKR MPFVKHLYSA SKQISSAISP DQNTNAFKEV AIIRHPRIGE YAIGFITSSV VLQRDDGDEE LCSIFVPTNH
201: LYIGDVFLVN SNDIIRPNLS VREGIEGFFI EMPCLVDNIL SVDCPTMVER MRLSPCMVGQ YSPHELAFES KLGLRDHCLC GNVNATGDFS YRKDHKTERP
301: DPSKQNVKVN RILFSRAYDL LALSYHSFTF E
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.