Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014012.1-P | Field mustard | peroxisome | 79.92 | 79.62 |
| CDY36014 | Canola | peroxisome | 79.92 | 79.62 |
| CDY47858 | Canola | peroxisome | 79.15 | 78.85 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 78.76 | 78.16 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 74.9 | 76.38 |
| PGSC0003DMT400016276 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 83.4 | 65.26 |
| Solyc12g007130.1.1 | Tomato | plasma membrane | 64.09 | 64.84 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 56.76 | 54.24 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 55.21 | 53.76 |
Protein Annotations
| EnsemblPlants:Solyc04g071710.2.1 | EnsemblPlantsGene:Solyc04g071710.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF4 |
| PFAM:PF04367 | TMHMM:TMhelix | UniParc:UPI0002766A1A | UniProt:K4BTG1 | MapMan:35.1 | : |
Description
Protein LIKE COV 2 [Source:Projected from Arabidopsis thaliana (AT1G43130) UniProtKB/Swiss-Prot;Acc:Q9C8C1]
Coordinates
chr4:-:58678710..58686318
Molecular Weight (calculated)
29307.4 Da
IEP (calculated)
6.518
GRAVY (calculated)
0.138
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDKKESTS SSPLRNETLH EDPEDLVKSP PSSPNSSTRK ACYAVLQSWV SKKFMTGCVV LFPVAVTFFI TWWFIQFVDG FFSPIYERLG IDIFGLGFVT
101: SITFIFFVGI FASSWLGSTV FWLGEWFIKR MPFVKHLYSA SKQISSAISP DQNTNAFKEV AIIRHPRIGE YAIGFITSSV VLQRDDGDEE LCSIFVPTNH
201: LYIGDVFLVN SNDIIRPNLS VREGIEIIVS VGMSMPQVIS PIERITRQND RIPLNRMLK
101: SITFIFFVGI FASSWLGSTV FWLGEWFIKR MPFVKHLYSA SKQISSAISP DQNTNAFKEV AIIRHPRIGE YAIGFITSSV VLQRDDGDEE LCSIFVPTNH
201: LYIGDVFLVN SNDIIRPNLS VREGIEIIVS VGMSMPQVIS PIERITRQND RIPLNRMLK
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.