Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400038585 | Potato | extracellular | 91.88 | 92.91 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 73.8 | 75.19 |
| CDY36483 | Canola | plasma membrane | 68.63 | 71.81 |
| CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 68.27 | 71.43 |
| VIT_18s0001g12380.t01 | Wine grape | peroxisome | 68.27 | 70.08 |
| Solyc12g007130.1.1 | Tomato | plasma membrane | 63.1 | 66.8 |
| AT2G18460.1 | Thale cress | plasma membrane | 66.79 | 66.06 |
| KRH15223 | Soybean | plastid | 60.52 | 63.32 |
| GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 63.47 | 61.65 |
| Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 60.15 | 58.63 |
| EES15972 | Sorghum | golgi, peroxisome, vacuole | 59.41 | 57.71 |
| Solyc04g071710.2.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 54.24 | 56.76 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 50.18 | 53.54 |
| Os12t0482600-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 33.95 | 51.69 |
Protein Annotations
| EnsemblPlants:Solyc02g085380.2.1 | EnsemblPlantsGene:Solyc02g085380.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF6 |
| PFAM:PF04367 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002769058 | UniProt:K4BB50 | MapMan:35.1 |
Description
No Description!
Coordinates
chr2:+:48307648..48309656
Molecular Weight (calculated)
30193.8 Da
IEP (calculated)
9.552
GRAVY (calculated)
0.261
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPRADREL ELLIPMGGVE NINASHSKSS SPSHSPKIPS SSRSHHSSGK EAFSKVIRSW TWKKFISGCV ILFPIAITFY ITWWFIHFVD AFFSPIYNHL
101: GINVFGLGFV TSMTFIFFVG VFMSSWLGAS LLSLGEWFIK KMPLMSYIYS ASKQISSAIS PDKTSHAFKE VAIIRHPRLG EYAFGFITST VILHKHSGAE
201: ELCCVYVPTN HLYLGDIFLV NSKDVMRPNL SVREGIEIVI SGGMAVPKVL NIQEEQSILS PRVGKFAVPQ V
101: GINVFGLGFV TSMTFIFFVG VFMSSWLGAS LLSLGEWFIK KMPLMSYIYS ASKQISSAIS PDKTSHAFKE VAIIRHPRLG EYAFGFITST VILHKHSGAE
201: ELCCVYVPTN HLYLGDIFLV NSKDVMRPNL SVREGIEIVI SGGMAVPKVL NIQEEQSILS PRVGKFAVPQ V
001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
Arabidopsis Description
LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.