Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 83.94 | 88.8 |
| CDY36483 | Canola | plasma membrane | 83.58 | 88.42 |
| VIT_18s0001g12380.t01 | Wine grape | peroxisome | 65.69 | 68.18 |
| PGSC0003DMT400038585 | Potato | extracellular | 65.69 | 67.16 |
| AT2G20130.1 | Thale cress | plasma membrane | 62.41 | 66.8 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 66.06 | 66.79 |
| KRH15223 | Soybean | plastid | 62.04 | 65.64 |
| PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 63.5 | 64.68 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 62.77 | 64.66 |
| GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 64.6 | 63.44 |
| AT2G20120.1 | Thale cress | plasma membrane | 59.85 | 61.19 |
| EES15972 | Sorghum | golgi, peroxisome, vacuole | 59.49 | 58.42 |
| Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 58.76 | 57.91 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 50.37 | 52.87 |
| Os12t0482600-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 33.94 | 52.25 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816360 | ProteinID:AAD15492.1 | ProteinID:AEC06770.1 | ArrayExpress:AT2G18460 | EnsemblPlantsGene:AT2G18460 |
| RefSeq:AT2G18460 | TAIR:AT2G18460 | RefSeq:AT2G18460-TAIR-G | EnsemblPlants:AT2G18460.1 | TAIR:AT2G18460.1 | Unigene:At.52805 |
| EMBL:DQ069818 | InterPro:DUF502 | UniProt:F4IQJ6 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | Symbol:LCV3 | RefSeq:NP_179436.3 |
| PFAM:PF04367 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF6 | TMHMM:TMhelix | UniParc:UPI0001E92CB9 | SEG:seg |
Description
LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
Coordinates
chr2:+:8001234..8002998
Molecular Weight (calculated)
30455.5 Da
IEP (calculated)
7.282
GRAVY (calculated)
0.480
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.