Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 62.37 | 67.18 |
| CDY36483 | Canola | plasma membrane | 62.01 | 66.8 |
| GSMUA_Achr6P22910_001 | Banana | plasma membrane | 60.57 | 65.76 |
| VIT_18s0001g12380.t01 | Wine grape | peroxisome | 62.01 | 65.53 |
| Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 65.23 | 65.47 |
| EES15972 | Sorghum | golgi, peroxisome, vacuole | 64.87 | 64.87 |
| AT2G18460.1 | Thale cress | plasma membrane | 63.44 | 64.6 |
| PGSC0003DMT400038585 | Potato | extracellular | 61.65 | 64.18 |
| GSMUA_Achr10P... | Banana | plasma membrane | 62.37 | 63.97 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 61.65 | 63.47 |
| KRH15223 | Soybean | plastid | 58.78 | 63.32 |
| GSMUA_Achr8P27800_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 61.65 | 62.77 |
| GSMUA_Achr3P15700_001 | Banana | cytosol, peroxisome, plasma membrane | 60.93 | 61.82 |
| PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 57.35 | 59.48 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 56.27 | 59.02 |
| Os12t0482600-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 36.56 | 57.3 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 50.18 | 55.34 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 49.82 | 54.51 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P27070_001 | EnsemblPlants:GSMUA_Achr1T27070_001 | EnsemblPlantsGene:GSMUA_Achr1G27070_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF6 | PFAM:PF04367 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000296E395 | UniProt:M0S3G4 | MapMan:35.1 | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G27070_001]
Coordinates
chr1:-:23648339..23651896
Molecular Weight (calculated)
30794.5 Da
IEP (calculated)
7.273
GRAVY (calculated)
0.296
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAVVARER DGDRELLIPV GETALEFHHH KDGAPPAAIS SPPPASHHTP TGIEALSKVI RSWASKTFMT GCVILLPIAI TFYTTWWFFS FVDGFFSPIY
101: AHLGINVFGL GFITSITFIF LVGMFMSSWL GTSLLGLGEW FIKKMPLVRH IYSASKQISG AISPDQSSRA FKEVVILRHP RIGEYAIGFI TSTVILRGSS
201: GDEELSCVYV PTNNLYLGDI FFFNSMDVIR PNLSVREGIE IVLSGGMSIP PVLSTRKVKD TLEEEVRILQ NPKLLSVKD
101: AHLGINVFGL GFITSITFIF LVGMFMSSWL GTSLLGLGEW FIKKMPLVRH IYSASKQISG AISPDQSSRA FKEVVILRHP RIGEYAIGFI TSTVILRGSS
201: GDEELSCVYV PTNNLYLGDI FFFNSMDVIR PNLSVREGIE IVLSGGMSIP PVLSTRKVKD TLEEEVRILQ NPKLLSVKD
001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
Arabidopsis Description
LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.