Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 99.61 | 99.61 |
AT2G18460.1 | Thale cress | plasma membrane | 88.42 | 83.58 |
CDY51223 | Canola | mitochondrion | 19.69 | 75.0 |
PGSC0003DMT400038585 | Potato | extracellular | 71.43 | 69.03 |
Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 71.81 | 68.63 |
VIT_18s0001g12380.t01 | Wine grape | peroxisome | 69.88 | 68.56 |
PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 69.11 | 66.54 |
Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 67.95 | 66.17 |
KRH15223 | Soybean | plastid | 65.25 | 65.25 |
CDY05723 | Canola | plasma membrane | 64.09 | 63.36 |
CDY46483 | Canola | plasma membrane | 64.09 | 63.36 |
CDY69713 | Canola | plasma membrane | 63.71 | 63.22 |
CDY31990 | Canola | plasma membrane | 64.09 | 62.64 |
GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 66.8 | 62.01 |
CDY50615 | Canola | plasma membrane | 61.78 | 61.78 |
CDX93027 | Canola | plasma membrane | 63.32 | 61.19 |
EES15972 | Sorghum | golgi, peroxisome, vacuole | 62.55 | 58.06 |
Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 62.16 | 57.91 |
CDY47858 | Canola | peroxisome | 52.51 | 52.31 |
Os12t0482600-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 35.91 | 52.25 |
CDY36014 | Canola | peroxisome | 52.12 | 51.92 |
Protein Annotations
EnsemblPlants:CDY36483 | EnsemblPlantsGene:GSBRNA2T00062144001 | GO:A0A078HI62 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF6 | PFAM:PF04367 | ProteinID:CDY36483 | ProteinID:CDY36483.1 |
SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDDE2B | UniProt:A0A078HI62 | MapMan:35.1 | : |
Description
BnaC03g48420DBnaC03g48420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI62]
Coordinates
chrLK032377:+:80379..81752
Molecular Weight (calculated)
28729.2 Da
IEP (calculated)
8.112
GRAVY (calculated)
0.462
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: METRERDLER LIPMHKSGEV VLSVPSSPLA SPIHVAGREA VYKVIRSWAS KKFMTGCVIL LPIAVTFYFT WWFIHFVDGF FSPIYTHLGI NMFGLGFVTS
101: ITFIFVVGVF MSSWLGASFL SIGEWFIKKM PLISYIYSAS KQISGAISPD HSSGAFKEVA IIRHPHRGEY AFGFITSTVI LRGRAGGEEL CCVYVPTNHL
201: YLGDIFLISS KDIIRPNLSV REGIEIVISG GMSIPEILTT LDAETIHRTV AGSFAIPQV
101: ITFIFVVGVF MSSWLGASFL SIGEWFIKKM PLISYIYSAS KQISGAISPD HSSGAFKEVA IIRHPHRGEY AFGFITSTVI LRGRAGGEEL CCVYVPTNHL
201: YLGDIFLISS KDIIRPNLSV REGIEIVISG GMSIPEILTT LDAETIHRTV AGSFAIPQV
001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
Arabidopsis Description
LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.