CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:

plastid 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, vacuole
Any Predictor:	peroxisome, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36483	Canola	plasma membrane	99.61	99.61
AT2G18460.1	Thale cress	plasma membrane	88.8	83.94
CDY51223	Canola	mitochondrion	19.69	75.0
PGSC0003DMT400038585	Potato	extracellular	71.04	68.66
Solyc02g085380.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.43	68.27
VIT_18s0001g12380.t01	Wine grape	peroxisome	69.5	68.18
PGSC0003DMT400016307	Potato	golgi, peroxisome, plasma membrane	68.73	66.17
Solyc04g071760.2.1	Tomato	golgi, peroxisome, vacuole	67.57	65.79
KRH15223	Soybean	plastid	65.25	65.25
CDY46483	Canola	plasma membrane	64.09	63.36
CDY69713	Canola	plasma membrane	63.71	63.22
CDY05723	Canola	plasma membrane	63.71	62.98
CDY31990	Canola	plasma membrane	64.09	62.64
GSMUA_Achr1P27070_001	Banana	golgi, peroxisome, plasma membrane	67.18	62.37
CDY50615	Canola	plasma membrane	61.78	61.78
CDX93027	Canola	plasma membrane	62.93	60.82
EES15972	Sorghum	golgi, peroxisome, vacuole	62.55	58.06
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	62.16	57.91
CDY47858	Canola	peroxisome	52.51	52.31
Os12t0482600-01	Rice	endoplasmic reticulum, mitochondrion, plastid	35.91	52.25
CDY36014	Canola	peroxisome	52.12	51.92

Protein Annotations

EnsemblPlants:CDY29235	EnsemblPlantsGene:GSBRNA2T00042163001	GO:A0A078GRX3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF6	PFAM:PF04367	ProteinID:CDY29235	ProteinID:CDY29235.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEE639	UniProt:A0A078GRX3	MapMan:35.1	:

Description

BnaA06g25220DBnaA06g25220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRX3]

Coordinates

chrLK032233:+:418745..420240

Molecular Weight (calculated)

28739.3 Da

IEP (calculated)

8.112

GRAVY (calculated)

0.459

Length

259 amino acids

Sequence
(BLAST)

001: METRERDLER LIPMHKSGEV VLSVPPSPLA SPIHVAGREA VYKVIRSWAS KKFMTGCVIL LPIAVTFYFT WWFIHFVDGF FSPIYTHLGI NMFGLGFVTS
101: ITFIFVVGVF MSSWLGASFL SIGEWFIKKM PLISYIYSAS KQISGAISPD HSSGAFKEVA IIRHPHRGEY AFGFITSTVI LRGRAGGEEL CCVYVPTNHL
201: YLGDIFLISS KDIIRPNLSV REGIEIVISG GMSIPEILTT LDAETIHRTV AGSFAIPQV

Best Arabidopsis Sequence Match ( AT2G18460.1 )
(BLAST)

001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT

Arabidopsis Description

LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.