CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, vacuole

Predictor Summary:

nucleus 1
golgi 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, vacuole
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	85.66	85.97
GSMUA_Achr1P27070_001	Banana	golgi, peroxisome, plasma membrane	64.87	64.87
CDY29235	Canola	peroxisome, plasma membrane, vacuole	58.06	62.55
CDY36483	Canola	plasma membrane	58.06	62.55
KRH15223	Soybean	plastid	57.35	61.78
VIT_18s0001g12380.t01	Wine grape	peroxisome	58.06	61.36
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	58.78	60.07
Os12t0482600-01	Rice	endoplasmic reticulum, mitochondrion, plastid	37.99	59.55
AT2G18460.1	Thale cress	plasma membrane	58.42	59.49
Solyc02g085380.2.1	Tomato	cytosol, peroxisome, plasma membrane	57.71	59.41
PGSC0003DMT400038585	Potato	extracellular	56.99	59.33
PGSC0003DMT400016307	Potato	golgi, peroxisome, plasma membrane	54.84	56.88
Solyc04g071760.2.1	Tomato	golgi, peroxisome, vacuole	54.12	56.77
EES03944	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	45.88	49.61
EES18295	Sorghum	plasma membrane	46.24	48.68
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	56.99	44.04

Protein Annotations

EnsemblPlants:EES15972	EnsemblPlantsGene:SORBI_3008G096900	EntrezGene:8063258	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0016020	GO:GO:0016021	InterPro:DUF502	PANTHER:PTHR31876
PANTHER:PTHR31876:SF6	PFAM:PF04367	ProteinID:EES15972	ProteinID:EES15972.1	RefSeq:XP_002442134.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0001A88260	UniProt:C5YNP5	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:45916321..45918904

Molecular Weight (calculated)

30416.2 Da

IEP (calculated)

7.070

GRAVY (calculated)

0.423

Length

279 amino acids

Sequence
(BLAST)

001: MAGRERDREM LLPVVAGEHV AGDEDDSEPT APVIIAGPPP PTTSARVLHL HHHPTGIEAF SRVIRSWAWK KFMSGCVILL PIAITFYTTW WFIRFVDGFF
101: SPIYVHLGIH LFGLGFVTSI SFIFLVGVFM SSWLGASLLG LGEFCIKRMP LVRHIYSASK QISAAISPDQ SSRAFKEVVI IRHPRIGEYA LGFITSTVAL
201: RGAGVRGDQQ DLACVYVPTN NLYLGDIFLM SRADVIIPDL SVREAIEIVL SGGMSVPKII SAVEGAVGLG DHGLAIKDS

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.