Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, vacuole
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15972 | Sorghum | golgi, peroxisome, vacuole | 85.97 | 85.66 |
| GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 65.47 | 65.23 |
| KRH15223 | Soybean | plastid | 58.99 | 63.32 |
| CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 57.91 | 62.16 |
| CDY36483 | Canola | plasma membrane | 57.91 | 62.16 |
| VIT_18s0001g12380.t01 | Wine grape | peroxisome | 58.99 | 62.12 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 58.63 | 60.15 |
| Os12t0482600-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 38.49 | 60.11 |
| PGSC0003DMT400038585 | Potato | extracellular | 57.55 | 59.7 |
| Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 58.27 | 59.34 |
| Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 57.91 | 58.97 |
| AT2G18460.1 | Thale cress | plasma membrane | 57.91 | 58.76 |
| Zm00001d016021_P001 | Maize | plasma membrane | 58.63 | 58.63 |
| PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 54.32 | 56.13 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 53.24 | 55.64 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 47.84 | 51.75 |
| Zm00001d010174_P004 | Maize | golgi, peroxisome, plastid, vacuole | 45.68 | 48.29 |
| Zm00001d042718_P001 | Maize | plastid | 45.68 | 44.25 |
| Zm00001d038319_P003 | Maize | plasma membrane | 46.76 | 39.39 |
| Zm00001d025321_P001 | Maize | mitochondrion | 18.7 | 36.11 |
| Zm00001d007647_P001 | Maize | mitochondrion | 18.7 | 36.11 |
Protein Annotations
| EMBL:BT055509 | EnsemblPlants:Zm00001d023653_P001 | EnsemblPlants:Zm00001d023653_T001 | EnsemblPlantsGene:Zm00001d023653 | EntrezGene:100304197 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF6 | PFAM:PF04367 |
| ProteinID:AQK39737.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0001917756 | UniProt:B8A1R7 | MapMan:35.1 |
Description
Protein LIKE COV 3
Coordinates
chr10:-:13701472..13703227
Molecular Weight (calculated)
30400.1 Da
IEP (calculated)
7.323
GRAVY (calculated)
0.383
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGRERDRE LLLPVVGGEH VAGNEDDSDP TTPVIAGPPP PTTSARVLHL HHHPTGIEAF SRVIRSWAWK KFMSGCVILL PIAITFYTTW WFIRFVDGFF
101: SPIYVHLGIH LFGLGFVTSI TFIFLVGVFM SSWLGASLLG LGEFFIKRMP LVRHIYSASK QISAAISPDQ SSRAFKEVVI IRHPRIGEYA LGFITSTVAL
201: RGAGVRGDQD LACVYVPTNN LYLGDIFLMS RADVIVPDLS VREAIEIILS GGMSVPKIIS AVEGAVGLGD YDRAVKDS
101: SPIYVHLGIH LFGLGFVTSI TFIFLVGVFM SSWLGASLLG LGEFFIKRMP LVRHIYSASK QISAAISPDQ SSRAFKEVVI IRHPRIGEYA LGFITSTVAL
201: RGAGVRGDQD LACVYVPTNN LYLGDIFLMS RADVIVPDLS VREAIEIILS GGMSVPKIIS AVEGAVGLGD YDRAVKDS
001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
Arabidopsis Description
LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.