Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15223 | Soybean | plastid | 71.59 | 72.97 |
| VIT_11s0016g03780.t01 | Wine grape | plasma membrane | 70.45 | 69.92 |
| CDY36483 | Canola | plasma membrane | 68.56 | 69.88 |
| PGSC0003DMT400038585 | Potato | extracellular | 70.83 | 69.78 |
| CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 68.18 | 69.5 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 68.94 | 68.42 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 70.08 | 68.27 |
| PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 69.32 | 68.03 |
| AT2G18460.1 | Thale cress | plasma membrane | 68.18 | 65.69 |
| GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 65.53 | 62.01 |
| Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 62.12 | 58.99 |
| EES15972 | Sorghum | golgi, peroxisome, vacuole | 61.36 | 58.06 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 53.79 | 55.69 |
| Os12t0482600-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 35.98 | 53.37 |
Protein Annotations
| EntrezGene:100247211 | wikigene:100247211 | MapMan:35.1 | ProteinID:CBI19686 | ProteinID:CBI19686.3 | InterPro:DUF502 |
| UniProt:E0CQB8 | EMBL:FN595227 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100247211 | wikigene:LOC100247211 | PFAM:PF04367 |
| PANTHER:PTHR31876 | PANTHER:PTHR31876:SF6 | TIGR:TC63435 | TMHMM:TMhelix | UniParc:UPI00015C7E54 | ArrayExpress:VIT_18s0001g12380 |
| EnsemblPlantsGene:VIT_18s0001g12380 | EnsemblPlants:VIT_18s0001g12380.t01 | unigene:Vvi.11576 | RefSeq:XP_002282793 | RefSeq:XP_002282793.1 | SEG:seg |
Description
No Description!
Coordinates
chr18:-:10583930..10587897
Molecular Weight (calculated)
28884.0 Da
IEP (calculated)
8.086
GRAVY (calculated)
0.368
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRERDRDL ELLIPVAATT DNVASKSSPS SPSSSSSHHH SGREAFSKVI RSWASKKFMS GCVILLPIAI TFYITWGFFH FVDGFFSPVY NQLGINVFGL
101: GFITSITFIF LVGVFMSSWL GASLLGLGEW FIKKMPLVSY IYSASKQISA AISPDQSSNA FKEVAIIRHP RIGEYAFGFI TNTVLLQRNT GEEELCCIYV
201: PSNHLYIGDV FLISSMDILR PNLSVREGIE IVISGGMSVP QILTTIDAQA IPASRIGNLV AAKV
101: GFITSITFIF LVGVFMSSWL GASLLGLGEW FIKKMPLVSY IYSASKQISA AISPDQSSNA FKEVAIIRHP RIGEYAFGFI TNTVLLQRNT GEEELCCIYV
201: PSNHLYIGDV FLISSMDILR PNLSVREGIE IVISGGMSVP QILTTIDAQA IPASRIGNLV AAKV
001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
Arabidopsis Description
LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.