Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- mitochondrion 2
- plasma membrane 2
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 60.11 | 38.49 |
| EES15972 | Sorghum | golgi, peroxisome, vacuole | 59.55 | 37.99 |
| GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 57.3 | 36.56 |
| VIT_18s0001g12380.t01 | Wine grape | peroxisome | 53.37 | 35.98 |
| CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 52.25 | 35.91 |
| CDY36483 | Canola | plasma membrane | 52.25 | 35.91 |
| KRH15223 | Soybean | plastid | 52.25 | 35.91 |
| PGSC0003DMT400038585 | Potato | extracellular | 52.81 | 35.07 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 51.69 | 33.95 |
| AT2G18460.1 | Thale cress | plasma membrane | 52.25 | 33.94 |
| Os05t0529000-01 | Rice | cytosol, peroxisome, plasma membrane | 51.69 | 33.7 |
| Os02t0269000-01 | Rice | plasma membrane | 54.49 | 33.33 |
| PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 48.31 | 31.97 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 47.75 | 31.95 |
| Os05t0437200-01 | Rice | cytosol, plasma membrane, vacuole | 41.01 | 28.08 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 38.76 | 23.88 |
Protein Annotations
| EnsemblPlants:Os12t0482600-01 | EnsemblPlantsGene:Os12g0482600 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF6 |
| PFAM:PF04367 | ProteinID:BAF29794.1 | ProteinID:BAT17153.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0000DD9EB3 |
| UniProt:Q0INC1 | MapMan:35.1 | : | : | : | : |
Description
Protein of unknown function DUF502 family protein. (Os12t0482600-01)
Coordinates
chr12:+:17786049..17788784
Molecular Weight (calculated)
19417.8 Da
IEP (calculated)
11.853
GRAVY (calculated)
0.140
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: EGPGQGSAAA HPGGSRPRRR RCCRRRPRGG DVVAAAGRDR GGRLAAAAAV VGARPPYPPP PYRHRGEAFS RVIRSWAWKK FMTGCVILLP IAITFYTTWW
101: FIRVVDGFFS PIYIHLGINV FGLGFATSIT FIFLAGVFMS SWLGASLLGL GELFIKKTPL VRHIYSSSKQ ISAAISPD
101: FIRVVDGFFS PIYIHLGINV FGLGFATSIT FIFLAGVFMS SWLGASLLGL GELFIKKTPL VRHIYSSSKQ ISAAISPD
001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
Arabidopsis Description
LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.