Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 96.99 | 95.91 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 75.19 | 73.8 |
| VIT_18s0001g12380.t01 | Wine grape | peroxisome | 68.42 | 68.94 |
| CDY36483 | Canola | plasma membrane | 66.17 | 67.95 |
| CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 65.79 | 67.57 |
| Solyc12g007130.1.1 | Tomato | plasma membrane | 61.65 | 64.06 |
| KRH15223 | Soybean | plastid | 62.03 | 63.71 |
| AT2G18460.1 | Thale cress | plasma membrane | 64.66 | 62.77 |
| GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 59.02 | 56.27 |
| Solyc04g071710.2.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 53.76 | 55.21 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 52.26 | 54.72 |
| EES15972 | Sorghum | golgi, peroxisome, vacuole | 56.77 | 54.12 |
| Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 55.64 | 53.24 |
| Os12t0482600-01 | Rice | endoplasmic reticulum, mitochondrion, plastid | 31.95 | 47.75 |
Protein Annotations
| EnsemblPlants:Solyc04g071760.2.1 | EnsemblPlantsGene:Solyc04g071760.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF6 |
| PFAM:PF04367 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002766A1F | UniProt:K4BTG6 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4:+:58716913..58719381
Molecular Weight (calculated)
29406.9 Da
IEP (calculated)
8.462
GRAVY (calculated)
0.236
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSDKDRDL ERLMPVGTLA VDVTKINGSK SSDQSPSPSS HHSDKEAFGK HIHSWLSKKF VSGCVILFPI AITFYLTWKL INFVDGFFSP IYNHLGIDVF
101: GLGFVTSLIF IFLVGVSMSS WLGASLLSLG EWIIKKMPLM SYIYTASKQI SSAISPDEDS HAFKEVAIIR HPRLGEYAFG FITSSIVLRK NTGAEELCCV
201: YVPTNHLYLG DVFLINSKDI MRPNLSVREG IEIVISGGMS VPQLLTIVDK QSTLSPRIGK FAVPQV
101: GLGFVTSLIF IFLVGVSMSS WLGASLLSLG EWIIKKMPLM SYIYTASKQI SSAISPDEDS HAFKEVAIIR HPRLGEYAFG FITSSIVLRK NTGAEELCCV
201: YVPTNHLYLG DVFLINSKDI MRPNLSVREG IEIVISGGMS VPQLLTIVDK QSTLSPRIGK FAVPQV
001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT
Arabidopsis Description
LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.