Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050735 | Potato | plasma membrane | 98.43 | 98.43 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 82.68 | 82.35 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 81.1 | 79.84 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 80.71 | 79.46 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 76.77 | 77.08 |
| Solyc04g071710.2.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 76.38 | 74.9 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 75.2 | 74.9 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 74.41 | 73.54 |
| EES03944 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 74.41 | 73.26 |
| TraesCS3B01G412400.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 73.62 | 72.2 |
| TraesCS3A01G379800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 72.83 | 71.43 |
| TraesCS3D01G372800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 73.23 | 70.72 |
| Os05t0437200-01 | Rice | cytosol, plasma membrane, vacuole | 70.87 | 69.23 |
| EES18295 | Sorghum | plasma membrane | 70.87 | 67.92 |
| TraesCS1A01G272400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 69.29 | 67.69 |
| TraesCS1B01G282400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 69.29 | 67.69 |
| TraesCS1D01G272500.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 69.29 | 67.69 |
| Zm00001d042718_P001 | Maize | plastid | 71.26 | 63.07 |
| Zm00001d010174_P004 | Maize | golgi, peroxisome, plastid, vacuole | 64.96 | 62.74 |
| Solyc12g007130.1.1 | Tomato | plasma membrane | 62.6 | 62.11 |
| HORVU1Hr1G075030.4 | Barley | cytosol, peroxisome, plasma membrane | 69.29 | 61.32 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 66.54 | 58.48 |
| HORVU3Hr1G083110.1 | Barley | cytosol, peroxisome | 70.87 | 56.43 |
| Zm00001d038319_P003 | Maize | plasma membrane | 70.87 | 54.55 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 54.72 | 52.26 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 53.54 | 50.18 |
Protein Annotations
| EnsemblPlants:Solyc04g051340.2.1 | EnsemblPlantsGene:Solyc04g051340.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF2 |
| PFAM:PF04367 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002766FAB | UniProt:K4BS94 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4:-:50395194..50400192
Molecular Weight (calculated)
28493.4 Da
IEP (calculated)
6.122
GRAVY (calculated)
0.212
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEKDPTSI PLSQASEDPE DPIKSTPASP NSSTRKACCY FLQSWVSKKF MTGCVVLFPV AVTFFVTWWF IQFVDGFFSP LYEQLGIDIF GLGFVTSLVF
101: VFLVGVFVSS WLGATVFWIG EWIIKRMPFV RHLYSASKQI SSAVSPDQNT TAFKEVAIIR HPRVGEYAFG FITSSVTLQT EEGDEELYSV FVPTNHLYIG
201: DVLLVNANDV IKPNMSIREG IEIIVSGGMT MPQRISHVAR VARQSERIPL NRIK
101: VFLVGVFVSS WLGATVFWIG EWIIKRMPFV RHLYSASKQI SSAVSPDQNT TAFKEVAIIR HPRVGEYAFG FITSSVTLQT EEGDEELYSV FVPTNHLYIG
201: DVLLVNANDV IKPNMSIREG IEIIVSGGMT MPQRISHVAR VARQSERIPL NRIK
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.