Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G372800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 74.92 | 90.87 |
| TraesCS3B01G412400.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 73.04 | 89.96 |
| TraesCS3A01G379800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 72.41 | 89.19 |
| EES03944 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 69.91 | 86.43 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 69.28 | 85.99 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 65.52 | 82.61 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 63.95 | 80.0 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 59.87 | 74.9 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 59.56 | 73.64 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 59.25 | 73.26 |
| CDY47858 | Canola | peroxisome | 59.56 | 73.08 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 65.83 | 72.66 |
| Zm00001d042718_P001 | Maize | plastid | 65.2 | 72.47 |
| CDY36014 | Canola | peroxisome | 58.93 | 72.31 |
| Bra014012.1-P | Field mustard | peroxisome | 58.93 | 72.31 |
| PGSC0003DMT400050735 | Potato | plasma membrane | 57.05 | 71.65 |
| HORVU1Hr1G075030.4 | Barley | cytosol, peroxisome, plasma membrane | 64.26 | 71.43 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 56.43 | 70.87 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 57.68 | 70.5 |
| HORVU1Hr1G081700.1 | Barley | mitochondrion | 47.65 | 45.24 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G083110.1 | EnsemblPlantsGene:HORVU3Hr1G083110 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF502 |
| PANTHER:PTHR31876 | PANTHER:PTHR31876:SF3 | PFAM:PF04367 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B489090 |
| UniProt:A0A287LZJ8 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:601475494..601480058
Molecular Weight (calculated)
34975.1 Da
IEP (calculated)
6.284
GRAVY (calculated)
0.135
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: PLDASLRSVA DSAPNPTACC YFPPAGEKAA AAAASDASPE PLLPRRSARR KVLEKEGDDA MAEEKESTSV PLSQAAEAVD PEDPAKSPPR PSSPTTSTRK
101: ACCAVLQSWV SRKFMTGCVV LFPVAFTFFI TWWFVQFVDG FFSPLYAKIG VDIFGLGFLT SLAFIFLVGI FVSSWVGSTV FWVGEWFIKK MPFVKHIYSA
201: SKQVSTAISP DQNTTAFKEV AIIRHPRVGE YAFGFITSTV VLQTDKGDEE LCSVYVPTNH LYIGDIFLLN SEEIIRPNLS IREGIEIIVS GGMTMPQVIA
301: SLDPIPRKSQ SIRLNRIMT
101: ACCAVLQSWV SRKFMTGCVV LFPVAFTFFI TWWFVQFVDG FFSPLYAKIG VDIFGLGFLT SLAFIFLVGI FVSSWVGSTV FWVGEWFIKK MPFVKHIYSA
201: SKQVSTAISP DQNTTAFKEV AIIRHPRVGE YAFGFITSTV VLQTDKGDEE LCSVYVPTNH LYIGDIFLLN SEEIIRPNLS IREGIEIIVS GGMTMPQVIA
301: SLDPIPRKSQ SIRLNRIMT
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.