Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G379800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 98.07 | 98.07 |
| TraesCS3D01G372800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 95.37 | 93.92 |
| EES03944 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 93.05 | 93.41 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 91.89 | 92.61 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 82.24 | 84.19 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 79.92 | 81.18 |
| TraesCS1B01G282400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 79.54 | 79.23 |
| Zm00001d042718_P001 | Maize | plastid | 87.26 | 78.75 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 77.22 | 78.43 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 76.45 | 76.74 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 76.06 | 76.36 |
| Bra014012.1-P | Field mustard | peroxisome | 74.9 | 74.62 |
| CDY36014 | Canola | peroxisome | 74.9 | 74.62 |
| PGSC0003DMT400050735 | Potato | plasma membrane | 72.97 | 74.41 |
| CDY47858 | Canola | peroxisome | 74.13 | 73.85 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 72.2 | 73.62 |
| HORVU3Hr1G083110.1 | Barley | cytosol, peroxisome | 89.96 | 73.04 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 72.97 | 72.41 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 78.38 | 70.24 |
| TraesCS1B01G363400.1 | Wheat | golgi, peroxisome, vacuole | 55.98 | 53.11 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G412400.1 | EnsemblPlantsGene:TraesCS3B01G412400 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF3 | PFAM:PF04367 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:648740024..648743959
Molecular Weight (calculated)
28797.9 Da
IEP (calculated)
7.384
GRAVY (calculated)
0.276
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEKESTSV PLSQAAEAVD PEDPAKSPPR PSSPTTSTRK ACCAVLQSWV SRKFMTGCVV LFPVAFTFFI TWWFVQFVDG FFSPLYAKLG VNIFGLGFLT
101: SLAFIFLVGI FVSSWVGSTV FWVGEWFIKK MPFVKHIYSA SKQVSTAVSP DQNTTAFKEV AIIRHPRVGE YAFGFITSTV VLQTDKGDEE LCSVYVPTNH
201: LYIGDIFLLN SEEIIRPNLS IREGIEIIVS GGMTMPQVIA SLDPIPRKSQ SIRLNRIMT
101: SLAFIFLVGI FVSSWVGSTV FWVGEWFIKK MPFVKHIYSA SKQVSTAVSP DQNTTAFKEV AIIRHPRVGE YAFGFITSTV VLQTDKGDEE LCSVYVPTNH
201: LYIGDIFLLN SEEIIRPNLS IREGIEIIVS GGMTMPQVIA SLDPIPRKSQ SIRLNRIMT
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.