Factsheet for TraesCS1B01G363400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, vacuole

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, vacuole
Any Predictor:	peroxisome, secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1A01G281600.1
TraesCS1A01G348700.1
TraesCS1B01G143000.1
TraesCS1B01G290700.1
TraesCS1B01G363400.1
TraesCS1D01G130300.1
TraesCS1D01G280800.1
TraesCS1D01G351700.1
TraesCS3A01G104300.1
TraesCS3A01G172900.1
TraesCS3A01G193800.1
TraesCS3A01G363600.1
TraesCS3B01G122600.1
TraesCS3B01G203800.1
TraesCS3B01G221700.1
TraesCS3B01G395800.1
TraesCS3D01G106500.1
TraesCS3D01G179300.1
TraesCS3D01G196200.1
TraesCS3D01G357100.1
TraesCS5A01G089200.1
TraesCS5B01G095200.1
TraesCS5D01G101300.1
TraesCS7B01G236300.1
TraesCS7D01G332100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	TraesCS1A01G348700.1	AT2G20130.1	21798944
AT2G20130.1	TraesCS1B01G363400.1	AT2G20130.1	21798944
AT2G20130.1	TraesCS1D01G351700.1	AT2G20130.1	21798944
AT2G20130.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS3D01G106500.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS3A01G172900.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3A01G193800.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3B01G203800.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3B01G221700.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3D01G179300.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3D01G196200.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS5A01G089200.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS5B01G095200.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS5D01G101300.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS7B01G236300.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS7D01G332100.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS1A01G281600.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS1B01G290700.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS1D01G280800.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS3A01G363600.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS3B01G395800.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS3D01G357100.1	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	97.07	92.66
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	96.7	92.31
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	81.69	81.69
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	81.69	81.69
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	80.95	80.95
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	80.22	80.22
HORVU1Hr1G081700.1	Barley	mitochondrion	94.51	76.79
Solyc12g007130.1.1	Tomato	plasma membrane	70.7	75.39
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	70.33	75.0
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	72.16	74.34
VIT_11s0016g03780.t01	Wine grape	plasma membrane	72.16	74.06
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	71.79	73.96
GSMUA_Achr6P22910_001	Banana	plasma membrane	69.6	73.93
CDY50615	Canola	plasma membrane	67.4	71.04
CDY69713	Canola	plasma membrane	67.77	70.88
Bra015065.1-P	Field mustard	plasma membrane	68.13	70.72
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	71.06	70.55
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	70.33	70.07
CDY46483	Canola	plasma membrane	67.03	69.85
AT2G20130.1	Thale cress	plasma membrane	64.84	69.14
CDX93027	Canola	plasma membrane	67.77	69.03
Bra013250.1-P	Field mustard	plasma membrane	67.77	69.03
AT2G20120.1	Thale cress	plasma membrane	66.3	67.54
CDY31990	Canola	plasma membrane	64.47	66.42
Bra041043.1-P	Field mustard	plasma membrane	64.47	66.42
CDY05723	Canola	plasma membrane	63.74	66.41
TraesCS3B01G412400.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	53.11	55.98
TraesCS1B01G282400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	51.65	54.23

Protein Annotations

EnsemblPlants:TraesCS1B01G363400.1	EnsemblPlantsGene:TraesCS1B01G363400	InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	PFAM:PF04367
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1B:-:592166999..592170297

Molecular Weight (calculated)

29936.0 Da

IEP (calculated)

7.271

GRAVY (calculated)

0.180

Length

273 amino acids

Sequence
(BLAST)

001: MGGRDRDREL LIPVSAGGGG GSVPRAGDDD DDLDRTVASP SASAALSSTG REAFHKVVRS WASKKFMTGC VILFPIAITF YFTWWFIHFV DGFFSPIYAQ
101: LGINIFGLGF ITSVTFIFFV GVFMSSWVGA SVLGIGEWII KRMPLVRHIY NASKQISAAI SPDQNKQAFK EAVIIRHPRI GEYAFGFITS SVSLQSYSGQ
201: EDLYCVYVPT NHLYIGDIFM VNSKDVIRPN LSVREGIEIV VSGGMSMPQI LSTLDPHPDL HAIHTDRGGA SRS

Best Arabidopsis Sequence Match ( AT2G20130.1 )
(BLAST)

001: MANRERDREL LIPVADFGDK DDGSSSKPSS SSSASSSHQS GHETLSLFIR GWASKKFMTG CVILLPIAVT FYTTWWFIHF VDGFFSPIYA LLGINIFGFG
101: FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT EEELCCVYVP
201: TNHLYIGDIL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTLDKPLA SIGNES

Arabidopsis Description

LCV1Protein LIKE COV 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY49]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.