Factsheet for GSMUA_Achr8P27800_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P15700_001
GSMUA_Achr6P22910_001
GSMUA_Achr7P09070_001
GSMUA_Achr8P02510_001
GSMUA_Achr8P27800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	GSMUA_Achr10P...	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr3P15700_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr6P22910_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr8P27800_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944
AT2G20130.1	GSMUA_Achr11P...	AT4G02080.1	21798944
AT2G20130.1	GSMUA_Achr8P02510_001	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22910_001	Banana	plasma membrane	75.91	80.93
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	81.02	80.73
CDY50615	Canola	plasma membrane	72.26	76.45
VIT_11s0016g03780.t01	Wine grape	plasma membrane	74.09	76.32
Solyc12g007130.1.1	Tomato	plasma membrane	70.44	75.39
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	70.44	75.39
GSMUA_Achr10P...	Banana	plasma membrane	74.45	75.0
AT2G20130.1	Thale cress	plasma membrane	69.71	74.61
Bra041043.1-P	Field mustard	plasma membrane	71.9	74.34
CDY31990	Canola	plasma membrane	71.9	74.34
CDY69713	Canola	plasma membrane	70.8	74.33
CDY05723	Canola	plasma membrane	70.8	74.05
CDX93027	Canola	plasma membrane	72.26	73.88
Bra013250.1-P	Field mustard	plasma membrane	72.26	73.88
Bra015065.1-P	Field mustard	plasma membrane	70.8	73.76
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	70.8	73.21
CDY46483	Canola	plasma membrane	69.71	72.9
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	72.63	72.89
AT2G20120.1	Thale cress	plasma membrane	71.17	72.76
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	70.07	72.45
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	71.9	72.16
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	71.53	71.79
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	70.8	71.06
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	70.07	70.33
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	70.8	67.83
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	70.44	67.48
GSMUA_Achr6P19630_001	Banana	plasma membrane	58.39	63.24
GSMUA_Achr1P27070_001	Banana	golgi, peroxisome, plasma membrane	62.77	61.65
GSMUA_Achr5P01100_001	Banana	plasma membrane	56.93	61.18
HORVU1Hr1G081700.1	Barley	mitochondrion	71.17	58.04

Protein Annotations

EnsemblPlants:GSMUA_Achr8P27800_001	EnsemblPlants:GSMUA_Achr8T27800_001	EnsemblPlantsGene:GSMUA_Achr8G27800_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	PFAM:PF04367	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002966457	UniProt:M0TU83	MapMan:35.1	:	:	:

Description

protein of unknown function DUF502 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G27800_001]

Coordinates

chr8:+:30813367..30818659

Molecular Weight (calculated)

30816.2 Da

IEP (calculated)

8.139

GRAVY (calculated)

0.111

Length

274 amino acids

Sequence
(BLAST)

001: MMGDVKSSSP MGNRERDREL LIPVATAADD PDSRASSSSA SPAHHHHHHP HPTSHSGREA CYKVIRSWVS KKFMTGCVIL FPIAITFYIT WWFIRFVDGF
101: FSPIFAQLGI NIFGLGFVTS ILFIFLVGVF MSSWLGTSVL NLGEWFIKRM PFVRHIYNAS KQISSAVSPD QNKQAFKEVV IIRHPRVGEY AFGFITSTVI
201: LQSYSGEDEL FCVYVPTNHL YIGDIFLVNS NDVIRPNLSV REGIEIVVSG GMSMPQILST LDPHTVPERT RTYP

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.