Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 4
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g03780.t01 | Wine grape | plasma membrane | 80.93 | 78.2 |
| PGSC0003DMT400000833 | Potato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 77.43 | 77.73 |
| Solyc12g007130.1.1 | Tomato | plasma membrane | 77.43 | 77.73 |
| AT2G20130.1 | Thale cress | plasma membrane | 76.65 | 76.95 |
| GSMUA_Achr3P15700_001 | Banana | cytosol, peroxisome, plasma membrane | 81.32 | 76.0 |
| GSMUA_Achr8P27800_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 80.93 | 75.91 |
| CDY50615 | Canola | plasma membrane | 76.26 | 75.68 |
| CDY05723 | Canola | plasma membrane | 77.04 | 75.57 |
| Bra041043.1-P | Field mustard | plasma membrane | 77.04 | 74.72 |
| CDY31990 | Canola | plasma membrane | 77.04 | 74.72 |
| Bra013250.1-P | Field mustard | plasma membrane | 77.82 | 74.63 |
| CDX93027 | Canola | plasma membrane | 77.82 | 74.63 |
| AT2G20120.1 | Thale cress | plasma membrane | 77.43 | 74.25 |
| KRH39309 | Soybean | cytosol, peroxisome, plasma membrane | 76.26 | 73.96 |
| CDY69713 | Canola | plasma membrane | 75.1 | 73.95 |
| Bra015065.1-P | Field mustard | plasma membrane | 75.49 | 73.76 |
| KRH48364 | Soybean | cytosol, peroxisome, plasma membrane | 75.88 | 73.58 |
| GSMUA_Achr10P... | Banana | plasma membrane | 77.82 | 73.53 |
| CDY46483 | Canola | plasma membrane | 74.71 | 73.28 |
| Os05t0529000-01 | Rice | cytosol, peroxisome, plasma membrane | 77.82 | 73.26 |
| Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 77.43 | 72.89 |
| Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 77.43 | 72.89 |
| EES19854 | Sorghum | cytosol, peroxisome, plasma membrane | 76.65 | 72.16 |
| TraesCS1B01G363400.1 | Wheat | golgi, peroxisome, vacuole | 73.93 | 69.6 |
| TraesCS1A01G348700.1 | Wheat | golgi, peroxisome, plasma membrane | 73.93 | 66.43 |
| TraesCS1D01G351700.1 | Wheat | golgi, peroxisome, plasma membrane | 73.93 | 66.43 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 63.42 | 64.43 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 62.65 | 63.14 |
| GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 65.76 | 60.57 |
| HORVU1Hr1G081700.1 | Barley | mitochondrion | 75.1 | 57.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P22910_001 | EnsemblPlants:GSMUA_Achr6T22910_001 | EnsemblPlantsGene:GSMUA_Achr6G22910_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF1 | PFAM:PF04367 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002954F28 | UniProt:M0T9D9 | MapMan:35.1 | : | : | : |
Description
protein of unknown function DUF502 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G22910_001]
Coordinates
chr6:+:21966127..21970693
Molecular Weight (calculated)
28495.4 Da
IEP (calculated)
7.178
GRAVY (calculated)
0.216
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDERSPSPM ASREKDRELL IPMADGTADA DHPDAKASSS SASARTHSSG REAFYKVIRS WASKKFMTGC VILFPIAITF YITWWFIHFV DGFFSPIYAG
101: LGINIFGLGF VTSITFIFLV GVLMSSWLGA SVLGLGEWFI KRMPFVRHIY NASKQISSAV SPDQNKQAFK EVAIIRHPRV GEYAFGFITS TVVLQSYNGE
201: EELCCVYVPT NHLYIGDVFL VNSNDVIRPN LSVREGIEIV VSGGMSMPQI ITTLHQC
101: LGINIFGLGF VTSITFIFLV GVLMSSWLGA SVLGLGEWFI KRMPFVRHIY NASKQISSAV SPDQNKQAFK EVAIIRHPRV GEYAFGFITS TVVLQSYNGE
201: EELCCVYVPT NHLYIGDVFL VNSNDVIRPN LSVREGIEIV VSGGMSMPQI ITTLHQC
001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
Arabidopsis Description
COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.