Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 90.51 | 89.8 |
| TraesCS3D01G372800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 86.96 | 83.65 |
| TraesCS3A01G379800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 84.58 | 82.63 |
| EES03944 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 84.19 | 82.56 |
| TraesCS3B01G412400.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 84.19 | 82.24 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 83.4 | 82.1 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 81.03 | 80.39 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 81.42 | 79.84 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 81.03 | 79.46 |
| Os05t0437200-01 | Rice | cytosol, plasma membrane, vacuole | 79.84 | 77.69 |
| PGSC0003DMT400050735 | Potato | plasma membrane | 77.87 | 77.56 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 77.08 | 76.77 |
| TraesCS1B01G282400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 78.26 | 76.15 |
| TraesCS1A01G272400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 78.26 | 76.15 |
| TraesCS1D01G272500.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 78.26 | 76.15 |
| EES18295 | Sorghum | plasma membrane | 78.66 | 75.09 |
| Bra014012.1-P | Field mustard | peroxisome | 77.08 | 75.0 |
| CDY36014 | Canola | peroxisome | 77.08 | 75.0 |
| CDY47858 | Canola | peroxisome | 75.89 | 73.85 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 74.31 | 72.03 |
| Zm00001d042718_P001 | Maize | plastid | 79.05 | 69.69 |
| HORVU1Hr1G075030.4 | Barley | cytosol, peroxisome, plasma membrane | 78.26 | 68.99 |
| Zm00001d010174_P004 | Maize | golgi, peroxisome, plastid, vacuole | 71.54 | 68.82 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 76.68 | 67.13 |
| HORVU3Hr1G083110.1 | Barley | cytosol, peroxisome | 82.61 | 65.52 |
| GSMUA_Achr6P22910_001 | Banana | plasma membrane | 64.43 | 63.42 |
| Zm00001d038319_P003 | Maize | plasma membrane | 76.68 | 58.79 |
| GSMUA_Achr10P... | Banana | plasma membrane | 62.85 | 58.46 |
| GSMUA_Achr8P27800_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 63.24 | 58.39 |
| GSMUA_Achr3P15700_001 | Banana | cytosol, peroxisome, plasma membrane | 62.45 | 57.45 |
| GSMUA_Achr1P27070_001 | Banana | golgi, peroxisome, plasma membrane | 55.34 | 50.18 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P19630_001 | EnsemblPlants:GSMUA_Achr6T19630_001 | EnsemblPlantsGene:GSMUA_Achr6G19630_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF4 | PFAM:PF04367 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000294AA1B | UniProt:M0T8G1 | MapMan:35.1 | : | : | : |
Description
COV1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G19630_001]
Coordinates
chr6:-:13924980..13934654
Molecular Weight (calculated)
28257.3 Da
IEP (calculated)
6.769
GRAVY (calculated)
0.257
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEKESTSV PLSQAADPED PAKAPPTSPS SSTRKACCAV LQSWVSKKFM TGCVVLFPVA ITFYVTWWFI QFVDGFFSPL YDKLGVDIFG LGFLTSLVFV
101: FLIGIFVSSW LGATVIWVGE WFIKRMPFVR HIYSASKQIS TAISPDQNTT AFKEVAIIRH PRVGEYAFGF ITSSVVLQTD KGDEELCSVY VPTNHLYIGD
201: IFLVNSEEII RPNLSVREGI EIIVSGGMTM PQLITPLERI PRKNQSIRLN RIT
101: FLIGIFVSSW LGATVIWVGE WFIKRMPFVR HIYSASKQIS TAISPDQNTT AFKEVAIIRH PRVGEYAFGF ITSSVVLQTD KGDEELCSVY VPTNHLYIGD
201: IFLVNSEEII RPNLSVREGI EIIVSGGMTM PQLITPLERI PRKNQSIRLN RIT
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.