CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53827	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	97.29	97.29
VIT_07s0031g02010.t01	Wine grape	plasma membrane	85.66	86.67
GSMUA_Achr5P01100_001	Banana	plasma membrane	80.62	81.57
GSMUA_Achr6P19630_001	Banana	plasma membrane	79.84	81.42
Solyc04g051340.2.1	Tomato	plasma membrane	79.46	80.71
PGSC0003DMT400050735	Potato	plasma membrane	79.46	80.71
EES03944	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	77.52	77.52
Zm00001d012269_P003	Maize	endoplasmic reticulum, peroxisome, plastid, vacuole	77.13	77.43
TraesCS3A01G379800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	77.13	76.83
TraesCS3B01G412400.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	76.74	76.45
TraesCS3D01G372800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	77.13	75.67
Bra014012.1-P	Field mustard	peroxisome	74.42	73.85
CDY36014	Canola	peroxisome	74.42	73.85
CDY47858	Canola	peroxisome	73.26	72.69
Os05t0437200-01	Rice	cytosol, plasma membrane, vacuole	73.26	72.69
AT1G43130.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	73.26	72.41
EES18295	Sorghum	plasma membrane	73.26	71.32
TraesCS1A01G272400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	71.32	70.77
TraesCS1B01G282400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	71.32	70.77
TraesCS1D01G272500.1	Wheat	cytosol, plasma membrane, plastid, vacuole	71.32	70.77
Zm00001d042718_P001	Maize	plastid	74.03	66.55
Zm00001d010174_P004	Maize	golgi, peroxisome, plastid, vacuole	67.83	66.54
HORVU1Hr1G075030.4	Barley	cytosol, peroxisome, plasma membrane	72.09	64.81
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	65.89	64.15
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	65.12	63.4
Os01t0867900-02	Rice	extracellular, plasma membrane	68.22	60.9
HORVU3Hr1G083110.1	Barley	cytosol, peroxisome	73.64	59.56
Zm00001d038319_P003	Maize	plasma membrane	73.64	57.58
KRH15223	Soybean	plastid	54.65	54.44

Protein Annotations

EntrezGene:100792693	MapMan:35.1	EMBL:ACUP02002741	EMBL:BT096154	UniProt:C6TEX7	InterPro:DUF502
EnsemblPlantsGene:GLYMA_04G217200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0016020	GO:GO:0016021	EnsemblPlants:KRH64114	ProteinID:KRH64114	ProteinID:KRH64114.1	ProteinID:KRH64115.1
PFAM:PF04367	PANTHER:PTHR31876	PANTHER:PTHR31876:SF2	TMHMM:TMhelix	UniParc:UPI0001B16E60	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:48817713..48822393

Molecular Weight (calculated)

28907.9 Da

IEP (calculated)

5.763

GRAVY (calculated)

0.162

Length

258 amino acids

Sequence
(BLAST)

001: MAEEKESTSI PLSQGENASR DDPEDPAKSP PSSPNSSTRK ACCFVLQSWV SKKFMTGCVV LFPVAVTFFI TWWFIQFVDG FFSPIYSRLG IDVFGLGFIT
101: SLAFVFLIGV FVSSWMGATV FWIGEWFIKR MPLVRHIYSA SKQISAAISP DQNTTAFKEV AIIRHPRVGE YAFGFITSTV ILQKDNEDEE LCSVFVPTNH
201: LYIGDIFLVN SKDIIRPNLS IREGIEIIVS GGMTMPQLIS PVERDTRPNE RVSLNRIG

Best Arabidopsis Sequence Match ( AT1G43130.1 )
(BLAST)

001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L

Arabidopsis Description

LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.