Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plastid, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18295 | Sorghum | plasma membrane | 85.55 | 84.91 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 76.05 | 77.82 |
| Os05t0437200-01 | Rice | cytosol, plasma membrane, vacuole | 76.05 | 76.92 |
| TraesCS1D01G272500.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 74.14 | 75.0 |
| TraesCS1B01G282400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 74.14 | 75.0 |
| TraesCS1A01G272400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 74.14 | 75.0 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 68.82 | 71.54 |
| HORVU1Hr1G075030.4 | Barley | cytosol, peroxisome, plasma membrane | 76.05 | 69.69 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 67.3 | 69.41 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 66.54 | 67.83 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 65.4 | 67.45 |
| Bra014012.1-P | Field mustard | peroxisome | 66.54 | 67.31 |
| CDY36014 | Canola | peroxisome | 66.54 | 67.31 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 65.78 | 67.05 |
| Zm00001d042718_P001 | Maize | plastid | 72.24 | 66.2 |
| CDY47858 | Canola | peroxisome | 65.4 | 66.15 |
| Zm00001d038319_P003 | Maize | plasma membrane | 82.51 | 65.76 |
| PGSC0003DMT400050735 | Potato | plasma membrane | 63.5 | 65.75 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 62.74 | 64.96 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 63.5 | 63.98 |
| Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 53.61 | 51.65 |
| Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 53.23 | 51.28 |
| Zm00001d016021_P001 | Maize | plasma membrane | 52.09 | 49.28 |
| Zm00001d023653_P001 | Maize | golgi, peroxisome, vacuole | 48.29 | 45.68 |
| Zm00001d007647_P001 | Maize | mitochondrion | 15.97 | 29.17 |
| Zm00001d025321_P001 | Maize | mitochondrion | 15.59 | 28.47 |
Protein Annotations
| EnsemblPlants:Zm00001d010174_P004 | EnsemblPlants:Zm00001d010174_T004 | EnsemblPlantsGene:Zm00001d010174 | EntrezGene:100217242 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF3 | PFAM:PF04367 | ProteinID:AQK93575.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000844617D | UniProt:A0A1D6FPM5 | MapMan:35.1 | : |
Description
Protein LIKE COV 2
Coordinates
chr8:-:102989232..102995741
Molecular Weight (calculated)
29109.5 Da
IEP (calculated)
8.210
GRAVY (calculated)
0.339
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEDKEYAPV PLGQAAAEAA APDSEDPAKS PPRPSSPGTS TRKAFFAVLQ SWVSRKFMTG CVVLLPIAVT FFITWWFIQF VDGFFSPLYA KLGFDIFGLG
101: FLTSLVFILL VGIFVSSWVG STVFWVGEWF IKKMPFVRHI YSASKQVSTA VSPDQNTTAF KEVAIISHPR VGEYAFGFIT STMVLQTDKG DEELCSVYVP
201: TNHLYIGDIF LVNSAEIIRP NLSIREGIGW FLALFLSLPL LLLSTKKMSE RKLLRPGGGV HPP
101: FLTSLVFILL VGIFVSSWVG STVFWVGEWF IKKMPFVRHI YSASKQVSTA VSPDQNTTAF KEVAIISHPR VGEYAFGFIT STMVLQTDKG DEELCSVYVP
201: TNHLYIGDIF LVNSAEIIRP NLSIREGIGW FLALFLSLPL LLLSTKKMSE RKLLRPGGGV HPP
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.