Factsheet for Zm00001d010806_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007647_P001
Zm00001d009211_P001
Zm00001d010055_P003
Zm00001d010806_P001
Zm00001d016021_P001
Zm00001d025321_P001
Zm00001d037747_P001
Zm00001d038756_P001
Zm00001d039455_P002
Zm00001d040278_P001
Zm00001d040752_P001
Zm00001d042866_P001
Zm00001d049068_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	Zm00001d007647_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d010806_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d016021_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d025321_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d038756_P001	AT2G20130.1	21798944
AT2G20130.1	Zm00001d037747_P001	AT3G13710.1	21798944
AT2G20130.1	Zm00001d039455_P002	AT3G13710.1	21798944
AT2G20130.1	Zm00001d009211_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d040278_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d040752_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d049068_P001	AT4G02080.1	21798944
AT2G20130.1	Zm00001d010055_P003	AT5G02040.1	21798944
AT2G20130.1	Zm00001d042866_P001	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	92.67	92.67
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	88.64	88.64
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	81.69	81.69
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	85.35	81.47
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	85.35	81.47
GSMUA_Achr6P22910_001	Banana	plasma membrane	72.89	77.43
VIT_11s0016g03780.t01	Wine grape	plasma membrane	74.73	76.69
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	71.79	76.56
Solyc12g007130.1.1	Tomato	plasma membrane	71.06	75.78
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	72.16	74.34
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	72.16	74.34
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	72.89	72.36
CDY69713	Canola	plasma membrane	68.5	71.65
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	71.79	71.53
CDY50615	Canola	plasma membrane	67.77	71.43
Bra015065.1-P	Field mustard	plasma membrane	68.5	71.1
HORVU1Hr1G081700.1	Barley	mitochondrion	87.18	70.83
CDX93027	Canola	plasma membrane	69.23	70.52
Bra013250.1-P	Field mustard	plasma membrane	69.23	70.52
CDY05723	Canola	plasma membrane	67.4	70.23
CDY46483	Canola	plasma membrane	67.03	69.85
AT2G20130.1	Thale cress	plasma membrane	65.2	69.53
CDY31990	Canola	plasma membrane	67.4	69.43
Bra041043.1-P	Field mustard	plasma membrane	67.4	69.43
AT2G20120.1	Thale cress	plasma membrane	68.13	69.4
Zm00001d016021_P001	Maize	plasma membrane	69.23	67.99
Zm00001d012269_P003	Maize	endoplasmic reticulum, peroxisome, plastid, vacuole	55.68	59.14
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	58.97	57.91
Zm00001d010174_P004	Maize	golgi, peroxisome, plastid, vacuole	51.28	53.23
Zm00001d042718_P001	Maize	plastid	52.75	50.17
Zm00001d038319_P003	Maize	plasma membrane	54.21	44.85
Zm00001d007647_P001	Maize	mitochondrion	21.98	41.67
Zm00001d025321_P001	Maize	mitochondrion	20.88	39.58

Protein Annotations

EMBL:BT036119	EnsemblPlants:Zm00001d010806_P001	EnsemblPlants:Zm00001d010806_T001	EnsemblPlantsGene:Zm00001d010806	EntrezGene:100193766	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	PFAM:PF04367
ProteinID:AQK94997.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00017B718E	UniProt:B4FG81	MapMan:35.1

Description

Protein LIKE COV 1

Coordinates

chr8:-:128421459..128425329

Molecular Weight (calculated)

29921.1 Da

IEP (calculated)

7.057

GRAVY (calculated)

0.199

Length

273 amino acids

Sequence
(BLAST)

001: MGDNKSPLSL SPMGGRDRDR ELLIPVSGGG SAPGVDDEDA DRASSASAAL SSSGREAFHK VVRSWASKKF MTGCVILFPI AITFYITWWF IHFVDGFFSP
101: IYAQLGINIF GLGFITSVTF IFLIGVFMSS WVGASVLSLG EWIIKRMPLV RHIYNASKQI SAAISPDQNK QAFKEAVIIR HPRVGEYAFG FITSSVSLQS
201: YSGQEDLYCV YVPTNHLYIG DIFMVNSKDV IRPNLSVREG IEIVVSGGMS MPQILSTLDP EMILGDRTGP SRS

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.