Factsheet for Bra041043.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000895.1-P
Bra005704.1-P
Bra021504.1-P
Bra027406.1-P
Bra036294.1-P
Bra041043.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	Bra041043.1-P	AT2G20130.1	21798944
AT2G20130.1	Bra021504.1-P	AT3G13710.1	21798944
AT2G20130.1	Bra027406.1-P	AT3G13710.1	21798944
AT2G20130.1	Bra000895.1-P	AT4G02080.1	21798944
AT2G20130.1	Bra036294.1-P	AT4G02080.1	21798944
AT2G20130.1	Bra005704.1-P	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31990	Canola	plasma membrane	100.0	100.0
AT2G20120.1	Thale cress	plasma membrane	90.94	89.93
AT2G20130.1	Thale cress	plasma membrane	82.64	85.55
VIT_11s0016g03780.t01	Wine grape	plasma membrane	78.49	78.2
GSMUA_Achr6P22910_001	Banana	plasma membrane	74.72	77.04
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	74.34	76.95
Bra015065.1-P	Field mustard	plasma membrane	76.23	76.81
Solyc12g007130.1.1	Tomato	plasma membrane	73.96	76.56
Bra013250.1-P	Field mustard	plasma membrane	76.98	76.12
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	72.45	72.45
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	72.45	72.45
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	74.72	72.0
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	74.34	71.9
GSMUA_Achr10P...	Banana	plasma membrane	71.32	69.49
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	70.57	68.5
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	70.19	68.13
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	69.81	67.77
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	69.43	67.4
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	66.42	64.47
Zm00001d016021_P001	Maize	plasma membrane	66.42	63.31
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	67.17	62.24
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	67.17	62.24
Os02t0269000-01	Rice	plasma membrane	67.92	61.86
Bra014012.1-P	Field mustard	peroxisome	56.23	57.31
HORVU1Hr1G081700.1	Barley	mitochondrion	67.17	52.98
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	65.66	48.2
Zm00001d025321_P001	Maize	mitochondrion	20.38	37.5
Zm00001d007647_P001	Maize	mitochondrion	20.0	36.81

Protein Annotations

EnsemblPlants:Bra041043.1	EnsemblPlants:Bra041043.1-P	EnsemblPlantsGene:Bra041043	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	PFAM:PF04367	SEG:seg	TMHMM:TMhelix
UniParc:UPI000253EC29	UniProt:M4FIW4	MapMan:35.1	:	:	:

Description

AT2G20120 (E=1e-136) COV1 | COV1 (CONTINUOUS VASCULAR RING)

Coordinates

chrScaffold000410:-:10467..11960

Molecular Weight (calculated)

29468.6 Da

IEP (calculated)

6.626

GRAVY (calculated)

0.232

Length

265 amino acids

Sequence
(BLAST)

001: MGDEKPTVVM ANRERDLELL MPVADKDQGS TSKPSSSSSS SSSHHQATHE TLSLFIRGWA SKKFMTGCVI LLPIAITFYI TWWFIHFVDG FFSPIYAQLG
101: INIFGFGFLT SIAFIFLVGV FMSSWLGASV LNLGEWFIKR MPFVRHIYNA SKQISTAISP DQNTQAFKEV AIIRHPRVGE YAFGFITSTV VLQNYPTEEE
201: LCCVYVPTNH LYIGDILLVN SNDVIRPNLS VREGIEIVVS GGMSMPQILS TIDKPAPSID RATSV

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.