Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69713 | Canola | plasma membrane | 99.24 | 100.0 |
| CDY46483 | Canola | plasma membrane | 96.58 | 96.95 |
| Bra013250.1-P | Field mustard | plasma membrane | 92.4 | 90.67 |
| VIT_11s0016g03780.t01 | Wine grape | plasma membrane | 78.33 | 77.44 |
| Bra041043.1-P | Field mustard | plasma membrane | 76.81 | 76.23 |
| GSMUA_Achr6P22910_001 | Banana | plasma membrane | 73.76 | 75.49 |
| KRH48364 | Soybean | cytosol, peroxisome, plasma membrane | 76.05 | 75.47 |
| PGSC0003DMT400000833 | Potato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 73.38 | 75.39 |
| KRH39309 | Soybean | cytosol, peroxisome, plasma membrane | 75.67 | 75.09 |
| Solyc12g007130.1.1 | Tomato | plasma membrane | 72.62 | 74.61 |
| GSMUA_Achr3P15700_001 | Banana | cytosol, peroxisome, plasma membrane | 76.05 | 72.73 |
| GSMUA_Achr10P... | Banana | plasma membrane | 73.76 | 71.32 |
| GSMUA_Achr8P27800_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 73.76 | 70.8 |
| Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 71.86 | 69.23 |
| EES19854 | Sorghum | cytosol, peroxisome, plasma membrane | 71.86 | 69.23 |
| Os05t0529000-01 | Rice | cytosol, peroxisome, plasma membrane | 71.1 | 68.5 |
| Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 71.1 | 68.5 |
| TraesCS1B01G363400.1 | Wheat | golgi, peroxisome, vacuole | 70.72 | 68.13 |
| TraesCS1D01G351700.1 | Wheat | golgi, peroxisome, plasma membrane | 72.62 | 66.78 |
| TraesCS1A01G348700.1 | Wheat | golgi, peroxisome, plasma membrane | 72.24 | 66.43 |
| Zm00001d016021_P001 | Maize | plasma membrane | 69.96 | 66.19 |
| Os02t0269000-01 | Rice | plasma membrane | 71.86 | 64.95 |
| Bra014012.1-P | Field mustard | peroxisome | 59.32 | 60.0 |
| HORVU1Hr1G081700.1 | Barley | mitochondrion | 71.86 | 56.25 |
| OQU84787 | Sorghum | nucleus, peroxisome, plasma membrane | 69.96 | 50.97 |
| Zm00001d025321_P001 | Maize | mitochondrion | 22.81 | 41.67 |
| Zm00001d007647_P001 | Maize | mitochondrion | 21.67 | 39.58 |
Protein Annotations
| EnsemblPlants:Bra015065.1 | EnsemblPlants:Bra015065.1-P | EnsemblPlantsGene:Bra015065 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF1 | PFAM:PF04367 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002540C76 | UniProt:M4DEZ3 | MapMan:35.1 | : | : | : |
Description
AT2G20120 (E=4e-112) COV1 | COV1 (CONTINUOUS VASCULAR RING)
Coordinates
chrA07:+:3824892..3826174
Molecular Weight (calculated)
29463.6 Da
IEP (calculated)
7.043
GRAVY (calculated)
0.135
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDAKPGIVM ANRDRELLIP VGEDDNDSTP KPSSSSSSSS AGQETFYKLI RSWASKKFMT GCVILLPMAI TFYVTWWFIH FVDGFFSPIY AHLGINIFGL
101: GFITSITFIF LVGVFMSSWL GTSVLNLGEW FIKRMPFVRH IYNASKQIST AISPDQNTQA FKEVAIIRHP RIGEYAIGFI TSTLVLQTYS DEEELCCVYV
201: PTNHLYIGDV FLVSTKDVIR PNLSVREGIE IVVSGGMSMP QVLSTLDMRS PSERSRSSRV ERN
101: GFITSITFIF LVGVFMSSWL GTSVLNLGEW FIKRMPFVRH IYNASKQIST AISPDQNTQA FKEVAIIRHP RIGEYAIGFI TSTLVLQTYS DEEELCCVYV
201: PTNHLYIGDV FLVSTKDVIR PNLSVREGIE IVVSGGMSMP QVLSTLDMRS PSERSRSSRV ERN
001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
Arabidopsis Description
COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.