Factsheet for Bra014012.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36014	Canola	peroxisome	100.0	100.0
CDY47858	Canola	peroxisome	94.23	94.23
AT1G43130.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	90.38	90.04
Solyc04g071710.2.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	79.62	79.92
GSMUA_Achr6P19630_001	Banana	plasma membrane	75.0	77.08
EES03944	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	75.77	76.36
GSMUA_Achr5P01100_001	Banana	plasma membrane	74.62	76.08
VIT_07s0031g02010.t01	Wine grape	plasma membrane	74.23	75.69
Zm00001d012269_P003	Maize	endoplasmic reticulum, peroxisome, plastid, vacuole	74.62	75.49
TraesCS3A01G379800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	75.0	75.29
TraesCS3B01G412400.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	74.62	74.9
KRH53827	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	73.85	74.42
KRH64114	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	73.85	74.42
Os05t0437200-01	Rice	cytosol, plasma membrane, vacuole	74.23	74.23
TraesCS3D01G372800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	74.62	73.76
EES18295	Sorghum	plasma membrane	74.23	72.83
TraesCS1A01G272400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	71.92	71.92
TraesCS1B01G282400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	71.92	71.92
TraesCS1D01G272500.1	Wheat	cytosol, plasma membrane, plastid, vacuole	71.92	71.92
Zm00001d010174_P004	Maize	golgi, peroxisome, plastid, vacuole	67.31	66.54
HORVU1Hr1G075030.4	Barley	cytosol, peroxisome, plasma membrane	71.54	64.81
Zm00001d042718_P001	Maize	plastid	71.54	64.81
Os01t0867900-02	Rice	extracellular, plasma membrane	68.08	61.25
Bra013250.1-P	Field mustard	plasma membrane	61.54	59.7
Bra015065.1-P	Field mustard	plasma membrane	60.0	59.32
HORVU3Hr1G083110.1	Barley	cytosol, peroxisome	72.31	58.93
PGSC0003DMT400016276	Potato	endoplasmic reticulum, nucleus, plasma membrane	73.08	57.4
Zm00001d038319_P003	Maize	plasma membrane	72.69	57.27
Bra041043.1-P	Field mustard	plasma membrane	57.31	56.23

Protein Annotations

EnsemblPlants:Bra014012.1	EnsemblPlants:Bra014012.1-P	EnsemblPlantsGene:Bra014012	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF4	PFAM:PF04367	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002546EA7	UniProt:M4DC00	MapMan:35.1	:	:	:

Description

AT1G43130 (E=9e-126) LCV2 | LCV2 (LIKE COV 2)

Coordinates

chrA08:-:4591657..4593197

Molecular Weight (calculated)

29108.9 Da

IEP (calculated)

6.630

GRAVY (calculated)

0.113

Length

260 amino acids

Sequence
(BLAST)

001: MAEDKEATTS SLSQGLAPQD PEDPPKSPPT SPNSSTRKAC YAVLQSWVSK KFMTGFVVLF PVAVTFLITW WFIQFVDGFF SPIYESLGVD IFGLGFITSV
101: LFTFFVGIFA SSWLGSTVFW LGEQFIKRMP FVRHLYSASK QVSTAISPDQ NTTAFKEVAI IRHPRIGEYA FGFITSSVTL QTDQGEEELC SVYVPTNHLY
201: IGDVFLVNSE EIIRPNLSIR EGIEIIVSVG MTMPQVISHV DRTKSRTAHQ HGHRIPLNRL

Best Arabidopsis Sequence Match ( AT1G43130.1 )
(BLAST)

001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L

Arabidopsis Description

LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.