Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014012.1-P | Field mustard | peroxisome | 90.04 | 90.38 |
| CDY36014 | Canola | peroxisome | 90.04 | 90.38 |
| CDY47858 | Canola | peroxisome | 87.74 | 88.08 |
| Solyc04g071710.2.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 78.16 | 78.76 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 72.8 | 74.51 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 72.8 | 74.51 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 72.03 | 74.31 |
| TraesCS3A01G379800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 73.18 | 73.75 |
| EES03944 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 72.41 | 73.26 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 72.41 | 73.26 |
| TraesCS3B01G412400.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 72.41 | 72.97 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 71.65 | 72.76 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 71.26 | 72.09 |
| TraesCS3D01G372800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 72.41 | 71.86 |
| Os05t0437200-01 | Rice | cytosol, plasma membrane, vacuole | 71.26 | 71.54 |
| EES18295 | Sorghum | plasma membrane | 70.88 | 69.81 |
| TraesCS1D01G272500.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 68.2 | 68.46 |
| TraesCS1A01G272400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 68.2 | 68.46 |
| TraesCS1B01G282400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 68.2 | 68.46 |
| Zm00001d010174_P004 | Maize | golgi, peroxisome, plastid, vacuole | 63.98 | 63.5 |
| Zm00001d042718_P001 | Maize | plastid | 68.97 | 62.72 |
| HORVU1Hr1G075030.4 | Barley | cytosol, peroxisome, plasma membrane | 68.58 | 62.37 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 65.9 | 59.52 |
| HORVU3Hr1G083110.1 | Barley | cytosol, peroxisome | 70.5 | 57.68 |
| AT2G20130.1 | Thale cress | plasma membrane | 55.94 | 57.03 |
| PGSC0003DMT400016276 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 71.65 | 56.5 |
| AT2G20120.1 | Thale cress | plasma membrane | 57.47 | 55.97 |
| Zm00001d038319_P003 | Maize | plasma membrane | 69.73 | 55.15 |
| AT2G18460.1 | Thale cress | plasma membrane | 52.87 | 50.37 |
Protein Annotations
| MapMan:35.1 | EntrezGene:840912 | UniProt:A0A178WDP4 | ProteinID:AAG50825.1 | ProteinID:AEE31947.1 | EMBL:AK176692 |
| EMBL:AK176760 | ArrayExpress:AT1G43130 | EnsemblPlantsGene:AT1G43130 | RefSeq:AT1G43130 | TAIR:AT1G43130 | RefSeq:AT1G43130-TAIR-G |
| EnsemblPlants:AT1G43130.1 | TAIR:AT1G43130.1 | EMBL:AY086303 | Unigene:At.39020 | EMBL:BT033158 | InterPro:DUF502 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 |
| GO:GO:0005802 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0010222 | GO:GO:0016020 | GO:GO:0016021 |
| Symbol:LCV2 | RefSeq:NP_564483.1 | ProteinID:OAP16540.1 | PFAM:PF04367 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31876 |
| PANTHER:PTHR31876:SF4 | UniProt:Q9C8C1 | TMHMM:TMhelix | UniParc:UPI000009DE5E | SEG:seg | : |
Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
Coordinates
chr1:-:16228189..16231254
Molecular Weight (calculated)
29218.1 Da
IEP (calculated)
6.721
GRAVY (calculated)
0.114
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.