CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane, plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012269_P003	Maize	endoplasmic reticulum, peroxisome, plastid, vacuole	94.96	95.33
TraesCS3B01G412400.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	93.41	93.05
TraesCS3A01G379800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	93.02	92.66
TraesCS3D01G372800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	90.31	88.59
EES18295	Sorghum	plasma membrane	86.82	84.53
GSMUA_Achr6P19630_001	Banana	plasma membrane	82.56	84.19
GSMUA_Achr5P01100_001	Banana	plasma membrane	82.56	83.53
Zm00001d042718_P001	Maize	plastid	91.47	82.23
KRH64114	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	77.52	77.52
VIT_07s0031g02010.t01	Wine grape	plasma membrane	76.36	77.25
KRH53827	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	77.13	77.13
CDY36014	Canola	peroxisome	76.36	75.77
Bra014012.1-P	Field mustard	peroxisome	76.36	75.77
CDY47858	Canola	peroxisome	75.97	75.38
PGSC0003DMT400050735	Potato	plasma membrane	73.64	74.8
Solyc04g051340.2.1	Tomato	plasma membrane	73.26	74.41
AT1G43130.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	73.26	72.41
Os01t0867900-02	Rice	extracellular, plasma membrane	80.62	71.97
HORVU3Hr1G083110.1	Barley	cytosol, peroxisome	86.43	69.91
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	57.75	54.58
EES15972	Sorghum	golgi, peroxisome, vacuole	49.61	45.88
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	56.59	40.44

Protein Annotations

EnsemblPlants:EES03944	EnsemblPlantsGene:SORBI_3003G368700	EntrezGene:8062382	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0016020	GO:GO:0016021	InterPro:DUF502	PANTHER:PTHR31876
PANTHER:PTHR31876:SF3	PFAM:PF04367	ProteinID:EES03944	ProteinID:EES03944.1	RefSeq:XP_002458824.1	SEG:seg
TMHMM:TMhelix	unigene:Sbi.7988	UniParc:UPI0001A852E2	UniProt:C5XQN6	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr3:-:68434759..68438336

Molecular Weight (calculated)

28816.0 Da

IEP (calculated)

6.770

GRAVY (calculated)

0.260

Length

258 amino acids

Sequence
(BLAST)

001: MAEEKESTSI PLSQAAEAVD PEDPAKSPPR PSSPTTSTRK ACCAVLQSWV SRKFMTGCVV LFPVAVTFFI TWWFIQFVDG FFSPLYAKFG VDIFGLGFLT
101: SLVFIFLVGL FVSSWVGSTI FWVGEWFIKK MPFVRHLYSA SKQVSTAISP DQNTTAFKEV AIIRHPRIGE YAFGFITSTV VLQTDKGDEE LCSVYVPTNH
201: LYIGDIFLVN SEEIIRPNLS IREGIEIIVS GGMTMPQVIA SLEPMPRKSQ SIRLNRMT

Best Arabidopsis Sequence Match ( AT1G43130.1 )
(BLAST)

001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L

Arabidopsis Description

LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.