Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g051340.2.1 | Tomato | plasma membrane | 98.43 | 98.43 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 81.89 | 81.57 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 81.1 | 79.84 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 80.71 | 79.46 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 77.56 | 77.87 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 75.59 | 75.29 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 75.2 | 74.32 |
| EES03944 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 74.8 | 73.64 |
| TraesCS3B01G412400.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 74.41 | 72.97 |
| TraesCS3A01G379800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 73.62 | 72.2 |
| TraesCS3D01G372800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 74.02 | 71.48 |
| Os05t0437200-01 | Rice | cytosol, plasma membrane, vacuole | 71.65 | 70.0 |
| EES18295 | Sorghum | plasma membrane | 71.65 | 68.68 |
| TraesCS1D01G272500.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 70.08 | 68.46 |
| TraesCS1A01G272400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 70.08 | 68.46 |
| TraesCS1B01G282400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 70.08 | 68.46 |
| Zm00001d042718_P001 | Maize | plastid | 72.05 | 63.76 |
| Zm00001d010174_P004 | Maize | golgi, peroxisome, plastid, vacuole | 65.75 | 63.5 |
| PGSC0003DMT400000833 | Potato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 63.39 | 62.89 |
| HORVU1Hr1G075030.4 | Barley | cytosol, peroxisome, plasma membrane | 70.08 | 62.02 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 67.72 | 59.52 |
| HORVU3Hr1G083110.1 | Barley | cytosol, peroxisome | 71.65 | 57.05 |
| Zm00001d038319_P003 | Maize | plasma membrane | 71.65 | 55.15 |
| PGSC0003DMT400016276 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 69.69 | 53.47 |
| PGSC0003DMT400016307 | Potato | golgi, peroxisome, plasma membrane | 53.94 | 50.93 |
| PGSC0003DMT400038585 | Potato | extracellular | 53.15 | 50.37 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400050735 | EnsemblPlantsGene:PGSC0003DMG402019700 | EntrezGene:102601749 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF2 | PFAM:PF04367 | PGSC:PGSC0003DMG402019700 | RefSeq:XP_006357340.1 |
| TMHMM:TMhelix | UniParc:UPI000296D743 | UniProt:M1BQR4 | MapMan:35.1 | : | : |
Description
COV1 [Source:PGSC_GENE;Acc:PGSC0003DMG402019700]
Coordinates
chr4:+:55589413..55594168
Molecular Weight (calculated)
28495.4 Da
IEP (calculated)
6.121
GRAVY (calculated)
0.224
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEKDPTSI PLSQASEDPE DAIKSTPASP NSSTRKACCY FLQSWVSKKF MTGCVVLFPV AVTFFVTWWF IQFVDGFFSP LYEQLGIDIF GLGFVTSLVF
101: VFLVGIFVSS WLGATVFWIG EWIIKRMPFV RHLYSASKQI SSAVSPDQNT TAFKEVAIIR HPRVGEYAFG FITSSVTLQT DEGDEELYSV FVPTNHLYIG
201: DVLLVNANDV IRPNMSIREG IEIIVSGGMT MPQRISHVAR VARQSERIPL NRIK
101: VFLVGIFVSS WLGATVFWIG EWIIKRMPFV RHLYSASKQI SSAVSPDQNT TAFKEVAIIR HPRVGEYAFG FITSSVTLQT DEGDEELYSV FVPTNHLYIG
201: DVLLVNANDV IRPNMSIREG IEIIVSGGMT MPQRISHVAR VARQSERIPL NRIK
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.