Factsheet for TraesCS1B01G282400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, vacuole, cytosol

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid, vacuole
Any Predictor:	cytosol, plasma membrane, plastid, vacuole
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G272500.1	Wheat	cytosol, plasma membrane, plastid, vacuole	100.0	100.0
TraesCS1A01G272400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	100.0	100.0
Os05t0437200-01	Rice	cytosol, plasma membrane, vacuole	86.54	86.54
HORVU1Hr1G075030.4	Barley	cytosol, peroxisome, plasma membrane	94.62	85.71
EES18295	Sorghum	plasma membrane	83.85	82.26
TraesCS3B01G412400.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	79.23	79.54
GSMUA_Achr6P19630_001	Banana	plasma membrane	76.15	78.26
GSMUA_Achr5P01100_001	Banana	plasma membrane	73.46	74.9
Zm00001d010174_P004	Maize	golgi, peroxisome, plastid, vacuole	75.0	74.14
VIT_07s0031g02010.t01	Wine grape	plasma membrane	71.15	72.55
Bra014012.1-P	Field mustard	peroxisome	71.92	71.92
CDY36014	Canola	peroxisome	71.92	71.92
KRH64114	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	70.77	71.32
KRH53827	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	70.77	71.32
CDY47858	Canola	peroxisome	71.15	71.15
PGSC0003DMT400050735	Potato	plasma membrane	68.46	70.08
Solyc04g051340.2.1	Tomato	plasma membrane	67.69	69.29
AT1G43130.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	68.46	68.2
Zm00001d038319_P003	Maize	plasma membrane	82.69	65.15
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	54.23	51.65

Protein Annotations

EnsemblPlants:TraesCS1B01G282400.1	EnsemblPlantsGene:TraesCS1B01G282400	InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF3	PFAM:PF04367
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1B:+:491238239..491242330

Molecular Weight (calculated)

28835.0 Da

IEP (calculated)

5.739

GRAVY (calculated)

0.292

Length

260 amino acids

Sequence
(BLAST)

001: MPEEKEYVAV PMGQAPEPAD PEDPVKSPPR PTSPATSTRQ ACFAVLQSWV SRKFMTGCVV IFPMAVTFFI TWWFIRFFDG FFSPLYAKLG VDVFGLGFVT
101: SLVFIFIVGI FVSSWVGSTV FWVGEWFIKK MPFVRHIYSA SKQVSTAVSP DQNTAAFKEV AIISHPRAGE YAFGFITSSM ILQTDKGDEE LCSVYVPTNH
201: LYIGDIFLVN SAEIIRPNLS IREGIEIIVS GGMTMPQVIT ALGPAPDKNE GTRLSRMMTV

Best Arabidopsis Sequence Match ( AT1G43130.1 )
(BLAST)

001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L

Arabidopsis Description

LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.