Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014012.1-P | Field mustard | peroxisome | 94.23 | 94.23 |
| CDY36014 | Canola | peroxisome | 94.23 | 94.23 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 88.08 | 87.74 |
| Solyc04g071710.2.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 78.85 | 79.15 |
| EES03944 | Sorghum | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 75.38 | 75.97 |
| GSMUA_Achr6P19630_001 | Banana | plasma membrane | 73.85 | 75.89 |
| TraesCS3A01G379800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 74.62 | 74.9 |
| Zm00001d012269_P003 | Maize | endoplasmic reticulum, peroxisome, plastid, vacuole | 73.85 | 74.71 |
| VIT_07s0031g02010.t01 | Wine grape | plasma membrane | 73.08 | 74.51 |
| GSMUA_Achr5P01100_001 | Banana | plasma membrane | 73.08 | 74.51 |
| TraesCS3B01G412400.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 73.85 | 74.13 |
| KRH64114 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 72.69 | 73.26 |
| KRH53827 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 72.69 | 73.26 |
| Os05t0437200-01 | Rice | cytosol, plasma membrane, vacuole | 73.08 | 73.08 |
| TraesCS3D01G372800.1 | Wheat | endoplasmic reticulum, peroxisome, plastid, vacuole | 73.85 | 73.0 |
| EES18295 | Sorghum | plasma membrane | 73.46 | 72.08 |
| TraesCS1B01G282400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 71.15 | 71.15 |
| TraesCS1A01G272400.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 71.15 | 71.15 |
| TraesCS1D01G272500.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 71.15 | 71.15 |
| Zm00001d010174_P004 | Maize | golgi, peroxisome, plastid, vacuole | 66.15 | 65.4 |
| HORVU1Hr1G075030.4 | Barley | cytosol, peroxisome, plasma membrane | 71.54 | 64.81 |
| Zm00001d042718_P001 | Maize | plastid | 70.77 | 64.11 |
| CDY50615 | Canola | plasma membrane | 61.92 | 62.16 |
| Os01t0867900-02 | Rice | extracellular, plasma membrane | 68.08 | 61.25 |
| CDY69713 | Canola | plasma membrane | 60.77 | 60.54 |
| CDX93027 | Canola | plasma membrane | 62.31 | 60.45 |
| CDY46483 | Canola | plasma membrane | 60.38 | 59.92 |
| HORVU3Hr1G083110.1 | Barley | cytosol, peroxisome | 73.08 | 59.56 |
| CDY05723 | Canola | plasma membrane | 57.69 | 57.25 |
| PGSC0003DMT400016276 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 72.69 | 57.1 |
| CDY31990 | Canola | plasma membrane | 58.08 | 56.98 |
| Zm00001d038319_P003 | Maize | plasma membrane | 71.92 | 56.67 |
| CDY36483 | Canola | plasma membrane | 52.31 | 52.51 |
| CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 52.31 | 52.51 |
| CDY51223 | Canola | mitochondrion | 13.46 | 51.47 |
Protein Annotations
| EnsemblPlants:CDY47858 | EnsemblPlantsGene:GSBRNA2T00088335001 | GO:A0A078IF94 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF4 | PFAM:PF04367 | ProteinID:CDY47858 | ProteinID:CDY47858.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EB640C | UniProt:A0A078IF94 | MapMan:35.1 | : |
Description
BnaCnng15540DBnaCnng15540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF94]
Coordinates
chrLK032741:-:45029..46961
Molecular Weight (calculated)
29139.0 Da
IEP (calculated)
6.630
GRAVY (calculated)
0.111
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDKEATTS SLSQGLAPQD PEDPPKSPPT SPNSSTRKAC YAVLQSWVSK KFMTGFVVLF PVAVTFLITW WFIQFVDGFF SPIYESLGVD IFGLGFITSV
101: LFTFFVGIFA SSWLGSTVFW LGEQFIKRMP FVRHLYSASK QVSTAISPDQ NTTAFKEVAI IRHPRIGEYA FGFITSSVTL QTDQGEEELC SVYVPTNHLY
201: IGDVFLVNSE EIIRPNLSIR EGIEIIVSVG MTMPQVISHV DRTKSRTAHQ HSHRIPLNRL
101: LFTFFVGIFA SSWLGSTVFW LGEQFIKRMP FVRHLYSASK QVSTAISPDQ NTTAFKEVAI IRHPRIGEYA FGFITSSVTL QTDQGEEELC SVYVPTNHLY
201: IGDVFLVNSE EIIRPNLSIR EGIEIIVSVG MTMPQVISHV DRTKSRTAHQ HSHRIPLNRL
001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L
Arabidopsis Description
LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.