Factsheet for Zm00001d012269_P003

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, vacuole, peroxisome

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plastid, vacuole
Any Predictor:	peroxisome, plastid, secretory
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03944	Sorghum	endoplasmic reticulum, peroxisome, plasma membrane, plastid	95.33	94.96
TraesCS3B01G412400.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	92.61	91.89
TraesCS3A01G379800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	91.44	90.73
TraesCS3D01G372800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	89.11	87.07
GSMUA_Achr6P19630_001	Banana	plasma membrane	82.1	83.4
GSMUA_Achr5P01100_001	Banana	plasma membrane	81.71	82.35
Zm00001d042718_P001	Maize	plastid	91.83	82.23
KRH64114	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	77.43	77.13
VIT_07s0031g02010.t01	Wine grape	plasma membrane	76.26	76.86
KRH53827	Soybean	endoplasmic reticulum, peroxisome, plasma membrane, plastid	77.04	76.74
Zm00001d010174_P004	Maize	golgi, peroxisome, plastid, vacuole	77.82	76.05
PGSC0003DMT400050735	Potato	plasma membrane	74.32	75.2
CDY36014	Canola	peroxisome	75.49	74.62
Bra014012.1-P	Field mustard	peroxisome	75.49	74.62
Solyc04g051340.2.1	Tomato	plasma membrane	73.54	74.41
CDY47858	Canola	peroxisome	74.71	73.85
Os01t0867900-02	Rice	extracellular, plasma membrane	81.71	72.66
AT1G43130.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane, plastid	72.76	71.65
HORVU3Hr1G083110.1	Barley	cytosol, peroxisome	85.99	69.28
Zm00001d038319_P003	Maize	plasma membrane	85.21	66.36
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	59.14	55.68
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	59.14	55.68
Zm00001d016021_P001	Maize	plasma membrane	57.59	53.24
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	51.75	47.84
Zm00001d007647_P001	Maize	mitochondrion	15.18	27.08
Zm00001d025321_P001	Maize	mitochondrion	14.4	25.69

Protein Annotations

EMBL:BT033446	EMBL:BT039671	EMBL:BT087555	EnsemblPlants:Zm00001d012269_P003	EnsemblPlants:Zm00001d012269_T003	EnsemblPlantsGene:Zm00001d012269
EntrezGene:100191373	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF502	PANTHER:PTHR31876
PANTHER:PTHR31876:SF3	PFAM:PF04367	ProteinID:AQK99244.1	ProteinID:AQK99245.1	ProteinID:AQK99247.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00017B6033	UniProt:B4F8K8	MapMan:35.1	:	:

Description

Protein LIKE COV 2

Coordinates

chr8:+:171641850..171647628

Molecular Weight (calculated)

28705.9 Da

IEP (calculated)

6.770

GRAVY (calculated)

0.261

Length

257 amino acids

Sequence
(BLAST)

001: MPEEESTSIP LSQAAEAVDP EDPAKSPPRP SSPTTSTRKA CCAVLQSWVS RKFMTGCVVL FPVAVTFFIT WWFIQFVDGF FSPLYAKLGI NIFGLGFLTS
101: LVFIFLVGIF VSSWVGSTIF WVGEWFIKKM PFVRHIYSAS KQVSTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSTVV LQTDKGDEEL CSVYVPTNHL
201: YIGDIFLVNS EEVIRPNLSI REGIEIIVSG GMTMPQVIAS LEPMPRKSQN IRLNRMT

Best Arabidopsis Sequence Match ( AT1G43130.1 )
(BLAST)

001: MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIFGLGFITS
101: VLFTFFVGIF ASSWLGSTVF WLGEQFIRRM PFVKHIYSAS KQISTAISPD QNTTAFKEVA IIRHPRIGEY AFGFITSSVT LQTDHGEEEL CSVYVPTNHL
201: YIGDVFLVSS EEIIRPNLSI REGIEIIVSV GMTMPQVISH VDRTTNRTPH QHSLRVPLNR L

Arabidopsis Description

LCV2LCV2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP4]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.