Factsheet for PGSC0003DMT400016307

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

plastid 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071760.2.1	Tomato	golgi, peroxisome, vacuole	95.91	96.99
PGSC0003DMT400038585	Potato	extracellular	76.21	76.49
VIT_18s0001g12380.t01	Wine grape	peroxisome	68.03	69.32
CDY36483	Canola	plasma membrane	66.54	69.11
CDY29235	Canola	peroxisome, plasma membrane, vacuole	66.17	68.73
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	61.34	64.45
AT2G18460.1	Thale cress	plasma membrane	64.68	63.5
KRH15223	Soybean	plastid	60.59	62.93
GSMUA_Achr1P27070_001	Banana	golgi, peroxisome, plasma membrane	59.48	57.35
EES15972	Sorghum	golgi, peroxisome, vacuole	56.88	54.84
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	56.13	54.32
PGSC0003DMT400050735	Potato	plasma membrane	50.93	53.94
Os12t0482600-01	Rice	endoplasmic reticulum, mitochondrion, plastid	31.97	48.31
PGSC0003DMT400016276	Potato	endoplasmic reticulum, nucleus, plasma membrane	49.07	39.88

Protein Annotations

EnsemblPlants:PGSC0003DMT400016307	EnsemblPlantsGene:PGSC0003DMG400006370	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF502
PANTHER:PTHR31876	PANTHER:PTHR31876:SF6	PFAM:PF04367	PGSC:PGSC0003DMG400006370	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296439F	UniProt:M1A7F5	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006370]

Coordinates

chr4:+:60579487..60582209

Molecular Weight (calculated)

29677.2 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.254

Length

269 amino acids

Sequence
(BLAST)

001: MGRSDKDRDL ERLMPVGTLA VDVTKINGSK SSDQSPSPSS PSSHHSAKEA FGKHIHSWLS KKFVSGCVIL FPIAITFYLT WKLINFVDGF FSPIYNHLGI
101: DVFGLGFVTS LIFIFLVGVS MSSWLGASLL SLGEWIIKKM PLMSYIYTAS KQISSAISPD EDSHAFKEVA IIRHPRLGEY AFGFITSTII LRKSTGAEEL
201: CCVYVPTNHL YLGDVFLINS KDIMRPNLSV REGIEIVISG GMSVPQILTI VDKQSILSPR VGKFDVPQV

Best Arabidopsis Sequence Match ( AT2G18460.1 )
(BLAST)

001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT

Arabidopsis Description

LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.